Sclerotinia sclerotiorum partitivirus S

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C7ENF5|C7ENF5_9VIRU Putative coat protein OS=Sclerotinia sclerotiorum partitivirus S OX=659497 PE=4 SV=1
MM1 pKa = 7.55SSRR4 pKa = 11.84SARR7 pKa = 11.84KK8 pKa = 9.7VSTQEE13 pKa = 3.83KK14 pKa = 9.23TSSQSGKK21 pKa = 9.71NRR23 pKa = 11.84ASKK26 pKa = 10.79KK27 pKa = 9.38SGKK30 pKa = 9.85KK31 pKa = 9.31SAPPEE36 pKa = 4.06YY37 pKa = 10.7SVDD40 pKa = 3.84TPSEE44 pKa = 4.01QSDD47 pKa = 4.05VEE49 pKa = 4.17SDD51 pKa = 3.01ILSEE55 pKa = 5.06LEE57 pKa = 4.37VSDD60 pKa = 5.54ADD62 pKa = 3.94DD63 pKa = 3.74ASRR66 pKa = 11.84PVPASKK72 pKa = 10.35SKK74 pKa = 10.82KK75 pKa = 8.12GTTRR79 pKa = 11.84NKK81 pKa = 10.3KK82 pKa = 9.6KK83 pKa = 9.57EE84 pKa = 3.85KK85 pKa = 10.4SVASSAGSSIPPYY98 pKa = 10.95MMMLTALNFFSLTEE112 pKa = 4.06IEE114 pKa = 4.72HH115 pKa = 5.12VTISTYY121 pKa = 10.4TPSCWSMYY129 pKa = 10.62AVLDD133 pKa = 3.97AMHH136 pKa = 7.32DD137 pKa = 3.87LVGDD141 pKa = 3.7NASLRR146 pKa = 11.84RR147 pKa = 11.84FCPYY151 pKa = 10.49YY152 pKa = 10.58HH153 pKa = 6.48VALSNIYY160 pKa = 9.99YY161 pKa = 10.3GIIFIIQVLRR171 pKa = 11.84ANQVANNLSQADD183 pKa = 3.85FQFLRR188 pKa = 11.84FFEE191 pKa = 5.27SNFALEE197 pKa = 4.59EE198 pKa = 4.21LPVAGPLVLFFQNLAAFKK216 pKa = 10.35PDD218 pKa = 3.0GNRR221 pKa = 11.84FNWVVPHH228 pKa = 5.56YY229 pKa = 10.99NNYY232 pKa = 9.86GPANGANSPRR242 pKa = 11.84VNAQSTALPQLPQMISLLNLFGASNAALLTAMDD275 pKa = 4.39TAGQWEE281 pKa = 5.12PFTFAAGGTIAGFAYY296 pKa = 10.26GAGFATDD303 pKa = 4.31AAASDD308 pKa = 3.58QTLRR312 pKa = 11.84APGINVPWQHH322 pKa = 6.47DD323 pKa = 3.73TAIHH327 pKa = 6.29RR328 pKa = 11.84KK329 pKa = 8.82LVPISRR335 pKa = 11.84RR336 pKa = 11.84MSVPTMNGAKK346 pKa = 10.11DD347 pKa = 3.58SPRR350 pKa = 11.84TYY352 pKa = 10.52CGLDD356 pKa = 3.47GQFHH360 pKa = 6.91WFHH363 pKa = 6.53KK364 pKa = 10.81AIGAVSQEE372 pKa = 3.77AKK374 pKa = 10.45YY375 pKa = 9.94FAGSTTLANINPSTGPSAVVEE396 pKa = 4.42TTVAVPAAAIPQATAWYY413 pKa = 9.08EE414 pKa = 4.07GYY416 pKa = 9.8PFNLNLTVNTRR427 pKa = 11.84VRR429 pKa = 11.84SISEE433 pKa = 3.87TDD435 pKa = 3.3VKK437 pKa = 10.74IGTFAATCNIITGGNFTRR455 pKa = 11.84WNGSSVFAGDD465 pKa = 3.57FFVAATNPINFEE477 pKa = 3.91NPTEE481 pKa = 4.16VNAIAMAQPTMTLSLYY497 pKa = 10.05RR498 pKa = 11.84PKK500 pKa = 10.82GGEE503 pKa = 4.06ANSDD507 pKa = 3.7DD508 pKa = 3.79

Molecular weight: 54.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C7ENF5|C7ENF5_9VIRU Putative coat protein OS=Sclerotinia sclerotiorum partitivirus S OX=659497 PE=4 SV=1
MM1 pKa = 7.68PALNLRR7 pKa = 11.84YY8 pKa = 9.4LFSISRR14 pKa = 11.84SEE16 pKa = 3.85MKK18 pKa = 10.3KK19 pKa = 9.69IRR21 pKa = 11.84SSHH24 pKa = 5.18TKK26 pKa = 9.07VSPRR30 pKa = 11.84EE31 pKa = 3.61EE32 pKa = 3.76ATRR35 pKa = 11.84FSILKK40 pKa = 9.8HH41 pKa = 6.48AILKK45 pKa = 9.76HH46 pKa = 5.58GSVGLLNQVLLGKK59 pKa = 10.02RR60 pKa = 11.84RR61 pKa = 11.84SDD63 pKa = 3.36ASDD66 pKa = 2.95EE67 pKa = 4.29RR68 pKa = 11.84LIQDD72 pKa = 3.18FHH74 pKa = 8.13EE75 pKa = 5.12FEE77 pKa = 4.59QPVHH81 pKa = 5.79PVPRR85 pKa = 11.84DD86 pKa = 3.36KK87 pKa = 10.99HH88 pKa = 4.88YY89 pKa = 11.29LRR91 pKa = 11.84ALRR94 pKa = 11.84VTEE97 pKa = 4.57KK98 pKa = 10.77LMKK101 pKa = 9.23PAKK104 pKa = 8.33TLHH107 pKa = 6.74PISFPDD113 pKa = 3.35LRR115 pKa = 11.84YY116 pKa = 10.26YY117 pKa = 10.29PWTKK121 pKa = 10.41NVSAEE126 pKa = 3.73APYY129 pKa = 10.92NFEE132 pKa = 4.16KK133 pKa = 10.53KK134 pKa = 10.23YY135 pKa = 11.18EE136 pKa = 3.92EE137 pKa = 4.28LLRR140 pKa = 11.84DD141 pKa = 3.66KK142 pKa = 11.01QRR144 pKa = 11.84LGEE147 pKa = 4.29IEE149 pKa = 3.98TATATFHH156 pKa = 6.47NLEE159 pKa = 4.55DD160 pKa = 5.21EE161 pKa = 4.14IFEE164 pKa = 4.69DD165 pKa = 4.39NRR167 pKa = 11.84YY168 pKa = 9.74LIHH171 pKa = 7.18KK172 pKa = 9.06IKK174 pKa = 10.88EE175 pKa = 4.01GDD177 pKa = 3.61SQFWDD182 pKa = 3.25KK183 pKa = 11.26DD184 pKa = 3.75GKK186 pKa = 9.32PRR188 pKa = 11.84PYY190 pKa = 11.05YY191 pKa = 9.64HH192 pKa = 6.36TTLHH196 pKa = 6.06ARR198 pKa = 11.84AHH200 pKa = 5.21VVGHH204 pKa = 6.56EE205 pKa = 4.23DD206 pKa = 3.15ADD208 pKa = 4.06KK209 pKa = 10.37IRR211 pKa = 11.84AVFGVPKK218 pKa = 10.18LLLMAEE224 pKa = 4.52NMFIWPLQAYY234 pKa = 8.11YY235 pKa = 11.04LNQDD239 pKa = 3.54TTKK242 pKa = 10.59HH243 pKa = 5.45HH244 pKa = 6.57LLWGNEE250 pKa = 3.5IMKK253 pKa = 10.57GGWKK257 pKa = 10.03KK258 pKa = 10.68LWGQLQNGRR267 pKa = 11.84ISRR270 pKa = 11.84TILSLDD276 pKa = 2.65WSEE279 pKa = 3.76FDD281 pKa = 4.32KK282 pKa = 11.22RR283 pKa = 11.84ALHH286 pKa = 6.1EE287 pKa = 4.76VIDD290 pKa = 5.01DD291 pKa = 3.69VHH293 pKa = 8.26SMWKK297 pKa = 9.05SWFDD301 pKa = 3.42FTHH304 pKa = 6.08YY305 pKa = 10.45EE306 pKa = 3.6PTIFYY311 pKa = 9.59EE312 pKa = 4.28KK313 pKa = 11.19GEE315 pKa = 4.02IPEE318 pKa = 3.68PHH320 pKa = 6.54RR321 pKa = 11.84RR322 pKa = 11.84IEE324 pKa = 4.17NLWIWMTDD332 pKa = 3.28MVKK335 pKa = 9.96HH336 pKa = 5.24YY337 pKa = 9.92PILQPDD343 pKa = 3.95GKK345 pKa = 10.64VYY347 pKa = 9.72QWTRR351 pKa = 11.84NGIASGFQQTQLLDD365 pKa = 3.61SFVNMIMLLTVLSANGINIEE385 pKa = 5.4HH386 pKa = 7.44PDD388 pKa = 3.43FWIKK392 pKa = 10.53VQGDD396 pKa = 3.66DD397 pKa = 3.6SLISIVEE404 pKa = 3.83RR405 pKa = 11.84RR406 pKa = 11.84FQMFGISYY414 pKa = 10.69LDD416 pKa = 3.46TLADD420 pKa = 3.6LASYY424 pKa = 9.58YY425 pKa = 10.79FNAKK429 pKa = 10.29LSVKK433 pKa = 10.17KK434 pKa = 10.76SFISDD439 pKa = 3.81TPQGQYY445 pKa = 10.31VLGYY449 pKa = 8.67FNHH452 pKa = 6.15YY453 pKa = 9.49GIPYY457 pKa = 10.38RR458 pKa = 11.84LDD460 pKa = 4.73DD461 pKa = 5.11DD462 pKa = 5.05LLSHH466 pKa = 6.86LVFPEE471 pKa = 4.1RR472 pKa = 11.84PQRR475 pKa = 11.84LEE477 pKa = 3.63EE478 pKa = 4.02TAASCVGIAMASMGCSKK495 pKa = 10.42VVYY498 pKa = 9.41SICDD502 pKa = 3.33DD503 pKa = 3.88AYY505 pKa = 9.72TFITKK510 pKa = 7.67TLRR513 pKa = 11.84RR514 pKa = 11.84PAKK517 pKa = 10.18AGSLFWLEE525 pKa = 3.71RR526 pKa = 11.84AFGYY530 pKa = 9.98EE531 pKa = 3.85MPNIAKK537 pKa = 8.89MPTFEE542 pKa = 4.01EE543 pKa = 4.29CLYY546 pKa = 10.9ASYY549 pKa = 10.19DD550 pKa = 3.36IPVRR554 pKa = 11.84TEE556 pKa = 3.48NMKK559 pKa = 10.32QRR561 pKa = 11.84LWPTNAKK568 pKa = 9.76AKK570 pKa = 10.34NGFYY574 pKa = 10.55FLRR577 pKa = 11.84HH578 pKa = 5.46LCC580 pKa = 3.92

Molecular weight: 68.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1088

508

580

544.0

61.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.824 ± 2.218

0.827 ± 0.026

5.055 ± 0.604

5.239 ± 0.854

5.331 ± 0.119

5.515 ± 0.515

2.941 ± 0.896

5.423 ± 0.587

5.607 ± 0.966

8.272 ± 1.294

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.665 ± 0.199

5.055 ± 1.074

5.607 ± 0.454

3.493 ± 0.033

5.055 ± 0.733

7.813 ± 1.332

5.974 ± 0.859

5.239 ± 0.566

2.022 ± 0.422

4.044 ± 0.587
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski