Salmonella phage P46FS4

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; Aglimvirinae; Agtrevirus; Salmonella virus P46FS4

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 212 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G6XUX0|A0A6G6XUX0_9CAUD SegD-like protein OS=Salmonella phage P46FS4 OX=2712940 GN=P46FS4_190 PE=4 SV=1
MM1 pKa = 7.61FIEE4 pKa = 3.95QLVYY8 pKa = 10.61LGAPEE13 pKa = 4.23AVFEE17 pKa = 4.26FRR19 pKa = 11.84DD20 pKa = 4.52PITPAVDD27 pKa = 3.5RR28 pKa = 11.84SLLAVQQCLVFPEE41 pKa = 4.9GVEE44 pKa = 4.11PPTSVILNNLPQSVQSGTQLPTFTFACIQAYY75 pKa = 10.18LFII78 pKa = 6.39

Molecular weight: 8.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G6XTE6|A0A6G6XTE6_9CAUD Putative DNA repair/recombination protein OS=Salmonella phage P46FS4 OX=2712940 GN=P46FS4_36 PE=4 SV=1
MM1 pKa = 7.6EE2 pKa = 5.61IEE4 pKa = 4.19EE5 pKa = 4.46VATFADD11 pKa = 5.33FLASRR16 pKa = 11.84MDD18 pKa = 3.51EE19 pKa = 3.81QKK21 pKa = 11.29VIDD24 pKa = 4.09KK25 pKa = 10.98VNAKK29 pKa = 9.55GKK31 pKa = 9.56RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LQCAPGFKK43 pKa = 10.4LSADD47 pKa = 3.72GSRR50 pKa = 11.84CEE52 pKa = 3.98VMVASEE58 pKa = 3.79RR59 pKa = 11.84RR60 pKa = 11.84TRR62 pKa = 11.84KK63 pKa = 9.58LGNRR67 pKa = 11.84KK68 pKa = 9.64AIRR71 pKa = 11.84AKK73 pKa = 10.19KK74 pKa = 9.33RR75 pKa = 11.84MGMGYY80 pKa = 8.62SRR82 pKa = 11.84KK83 pKa = 9.18IEE85 pKa = 4.0RR86 pKa = 11.84RR87 pKa = 11.84KK88 pKa = 9.83KK89 pKa = 9.75KK90 pKa = 10.38AMKK93 pKa = 8.73FRR95 pKa = 11.84KK96 pKa = 9.24MMGLSS101 pKa = 3.27

Molecular weight: 11.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

212

0

212

48782

32

1612

230.1

25.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.206 ± 0.191

1.15 ± 0.072

6.547 ± 0.114

6.48 ± 0.162

4.303 ± 0.121

6.931 ± 0.228

1.845 ± 0.103

6.078 ± 0.105

6.261 ± 0.173

8.103 ± 0.157

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.884 ± 0.104

4.879 ± 0.146

3.958 ± 0.114

3.782 ± 0.113

4.949 ± 0.137

5.943 ± 0.151

6.119 ± 0.2

7.458 ± 0.163

1.351 ± 0.072

3.774 ± 0.122
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski