Amino acid dipepetide frequency for Wuhan poty-like virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.608AlaAla: 9.608 ± 0.0
1.153AlaCys: 1.153 ± 0.0
2.306AlaAsp: 2.306 ± 0.0
3.459AlaGlu: 3.459 ± 0.0
3.075AlaPhe: 3.075 ± 0.0
4.228AlaGly: 4.228 ± 0.0
3.459AlaHis: 3.459 ± 0.0
5.765AlaIle: 5.765 ± 0.0
5.38AlaLys: 5.38 ± 0.0
6.918AlaLeu: 6.918 ± 0.0
4.612AlaMet: 4.612 ± 0.0
4.228AlaAsn: 4.228 ± 0.0
3.459AlaPro: 3.459 ± 0.0
2.69AlaGln: 2.69 ± 0.0
4.228AlaArg: 4.228 ± 0.0
2.306AlaSer: 2.306 ± 0.0
4.228AlaThr: 4.228 ± 0.0
3.075AlaVal: 3.075 ± 0.0
2.69AlaTrp: 2.69 ± 0.0
4.228AlaTyr: 4.228 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.153CysAla: 1.153 ± 0.0
0.769CysCys: 0.769 ± 0.0
1.153CysAsp: 1.153 ± 0.0
1.153CysGlu: 1.153 ± 0.0
0.384CysPhe: 0.384 ± 0.0
1.153CysGly: 1.153 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.537CysIle: 1.537 ± 0.0
0.769CysLys: 0.769 ± 0.0
1.537CysLeu: 1.537 ± 0.0
0.384CysMet: 0.384 ± 0.0
0.384CysAsn: 0.384 ± 0.0
0.769CysPro: 0.769 ± 0.0
0.769CysGln: 0.769 ± 0.0
0.384CysArg: 0.384 ± 0.0
0.769CysSer: 0.769 ± 0.0
0.769CysThr: 0.769 ± 0.0
0.384CysVal: 0.384 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.153CysTyr: 1.153 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.765AspAla: 5.765 ± 0.0
0.0AspCys: 0.0 ± 0.0
6.918AspAsp: 6.918 ± 0.0
4.612AspGlu: 4.612 ± 0.0
3.075AspPhe: 3.075 ± 0.0
5.765AspGly: 5.765 ± 0.0
0.769AspHis: 0.769 ± 0.0
3.843AspIle: 3.843 ± 0.0
2.306AspLys: 2.306 ± 0.0
5.38AspLeu: 5.38 ± 0.0
1.153AspMet: 1.153 ± 0.0
4.228AspAsn: 4.228 ± 0.0
1.922AspPro: 1.922 ± 0.0
0.769AspGln: 0.769 ± 0.0
1.922AspArg: 1.922 ± 0.0
2.306AspSer: 2.306 ± 0.0
1.537AspThr: 1.537 ± 0.0
3.843AspVal: 3.843 ± 0.0
0.0AspTrp: 0.0 ± 0.0
0.769AspTyr: 0.769 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.228GluAla: 4.228 ± 0.0
0.769GluCys: 0.769 ± 0.0
1.922GluAsp: 1.922 ± 0.0
4.612GluGlu: 4.612 ± 0.0
2.69GluPhe: 2.69 ± 0.0
0.769GluGly: 0.769 ± 0.0
3.843GluHis: 3.843 ± 0.0
4.612GluIle: 4.612 ± 0.0
6.533GluLys: 6.533 ± 0.0
7.302GluLeu: 7.302 ± 0.0
3.459GluMet: 3.459 ± 0.0
3.843GluAsn: 3.843 ± 0.0
1.537GluPro: 1.537 ± 0.0
3.459GluGln: 3.459 ± 0.0
3.843GluArg: 3.843 ± 0.0
2.306GluSer: 2.306 ± 0.0
2.69GluThr: 2.69 ± 0.0
2.306GluVal: 2.306 ± 0.0
0.0GluTrp: 0.0 ± 0.0
1.922GluTyr: 1.922 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.075PheAla: 3.075 ± 0.0
0.384PheCys: 0.384 ± 0.0
3.843PheAsp: 3.843 ± 0.0
2.306PheGlu: 2.306 ± 0.0
1.537PhePhe: 1.537 ± 0.0
1.153PheGly: 1.153 ± 0.0
0.384PheHis: 0.384 ± 0.0
2.306PheIle: 2.306 ± 0.0
3.075PheLys: 3.075 ± 0.0
4.228PheLeu: 4.228 ± 0.0
1.922PheMet: 1.922 ± 0.0
1.922PheAsn: 1.922 ± 0.0
0.769PhePro: 0.769 ± 0.0
1.537PheGln: 1.537 ± 0.0
1.922PheArg: 1.922 ± 0.0
3.843PheSer: 3.843 ± 0.0
2.306PheThr: 2.306 ± 0.0
3.459PheVal: 3.459 ± 0.0
0.0PheTrp: 0.0 ± 0.0
1.537PheTyr: 1.537 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.075GlyAla: 3.075 ± 0.0
1.153GlyCys: 1.153 ± 0.0
3.843GlyAsp: 3.843 ± 0.0
3.075GlyGlu: 3.075 ± 0.0
0.769GlyPhe: 0.769 ± 0.0
4.996GlyGly: 4.996 ± 0.0
1.153GlyHis: 1.153 ± 0.0
3.843GlyIle: 3.843 ± 0.0
6.149GlyLys: 6.149 ± 0.0
3.843GlyLeu: 3.843 ± 0.0
2.69GlyMet: 2.69 ± 0.0
3.075GlyAsn: 3.075 ± 0.0
1.153GlyPro: 1.153 ± 0.0
3.075GlyGln: 3.075 ± 0.0
4.228GlyArg: 4.228 ± 0.0
4.228GlySer: 4.228 ± 0.0
1.537GlyThr: 1.537 ± 0.0
5.38GlyVal: 5.38 ± 0.0
1.922GlyTrp: 1.922 ± 0.0
1.922GlyTyr: 1.922 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
3.459HisAla: 3.459 ± 0.0
1.537HisCys: 1.537 ± 0.0
2.69HisAsp: 2.69 ± 0.0
1.922HisGlu: 1.922 ± 0.0
1.922HisPhe: 1.922 ± 0.0
3.459HisGly: 3.459 ± 0.0
0.769HisHis: 0.769 ± 0.0
1.537HisIle: 1.537 ± 0.0
0.769HisLys: 0.769 ± 0.0
1.922HisLeu: 1.922 ± 0.0
1.153HisMet: 1.153 ± 0.0
1.153HisAsn: 1.153 ± 0.0
0.769HisPro: 0.769 ± 0.0
1.922HisGln: 1.922 ± 0.0
1.153HisArg: 1.153 ± 0.0
2.69HisSer: 2.69 ± 0.0
1.537HisThr: 1.537 ± 0.0
1.537HisVal: 1.537 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.769HisTyr: 0.769 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.612IleAla: 4.612 ± 0.0
1.153IleCys: 1.153 ± 0.0
2.306IleAsp: 2.306 ± 0.0
3.459IleGlu: 3.459 ± 0.0
1.922IlePhe: 1.922 ± 0.0
3.459IleGly: 3.459 ± 0.0
1.922IleHis: 1.922 ± 0.0
3.075IleIle: 3.075 ± 0.0
2.306IleLys: 2.306 ± 0.0
4.996IleLeu: 4.996 ± 0.0
2.306IleMet: 2.306 ± 0.0
1.922IleAsn: 1.922 ± 0.0
3.075IlePro: 3.075 ± 0.0
3.843IleGln: 3.843 ± 0.0
2.306IleArg: 2.306 ± 0.0
4.996IleSer: 4.996 ± 0.0
4.228IleThr: 4.228 ± 0.0
2.306IleVal: 2.306 ± 0.0
0.769IleTrp: 0.769 ± 0.0
1.922IleTyr: 1.922 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.612LysAla: 4.612 ± 0.0
1.153LysCys: 1.153 ± 0.0
3.075LysAsp: 3.075 ± 0.0
4.996LysGlu: 4.996 ± 0.0
2.306LysPhe: 2.306 ± 0.0
4.612LysGly: 4.612 ± 0.0
3.459LysHis: 3.459 ± 0.0
4.228LysIle: 4.228 ± 0.0
6.149LysLys: 6.149 ± 0.0
7.686LysLeu: 7.686 ± 0.0
1.537LysMet: 1.537 ± 0.0
2.306LysAsn: 2.306 ± 0.0
1.922LysPro: 1.922 ± 0.0
2.69LysGln: 2.69 ± 0.0
3.075LysArg: 3.075 ± 0.0
5.765LysSer: 5.765 ± 0.0
3.843LysThr: 3.843 ± 0.0
4.612LysVal: 4.612 ± 0.0
0.0LysTrp: 0.0 ± 0.0
1.153LysTyr: 1.153 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.686LeuAla: 7.686 ± 0.0
1.537LeuCys: 1.537 ± 0.0
4.612LeuAsp: 4.612 ± 0.0
6.149LeuGlu: 6.149 ± 0.0
2.69LeuPhe: 2.69 ± 0.0
6.533LeuGly: 6.533 ± 0.0
3.459LeuHis: 3.459 ± 0.0
4.612LeuIle: 4.612 ± 0.0
4.228LeuLys: 4.228 ± 0.0
7.302LeuLeu: 7.302 ± 0.0
0.769LeuMet: 0.769 ± 0.0
4.228LeuAsn: 4.228 ± 0.0
2.306LeuPro: 2.306 ± 0.0
5.765LeuGln: 5.765 ± 0.0
3.843LeuArg: 3.843 ± 0.0
7.302LeuSer: 7.302 ± 0.0
4.996LeuThr: 4.996 ± 0.0
8.071LeuVal: 8.071 ± 0.0
0.769LeuTrp: 0.769 ± 0.0
3.459LeuTyr: 3.459 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
3.459MetAla: 3.459 ± 0.0
0.384MetCys: 0.384 ± 0.0
2.306MetAsp: 2.306 ± 0.0
1.537MetGlu: 1.537 ± 0.0
0.384MetPhe: 0.384 ± 0.0
1.922MetGly: 1.922 ± 0.0
0.769MetHis: 0.769 ± 0.0
1.922MetIle: 1.922 ± 0.0
4.612MetLys: 4.612 ± 0.0
2.69MetLeu: 2.69 ± 0.0
3.075MetMet: 3.075 ± 0.0
1.922MetAsn: 1.922 ± 0.0
1.537MetPro: 1.537 ± 0.0
0.769MetGln: 0.769 ± 0.0
1.922MetArg: 1.922 ± 0.0
1.537MetSer: 1.537 ± 0.0
2.306MetThr: 2.306 ± 0.0
2.306MetVal: 2.306 ± 0.0
0.384MetTrp: 0.384 ± 0.0
1.537MetTyr: 1.537 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.459AsnAla: 3.459 ± 0.0
0.384AsnCys: 0.384 ± 0.0
2.69AsnAsp: 2.69 ± 0.0
3.075AsnGlu: 3.075 ± 0.0
1.153AsnPhe: 1.153 ± 0.0
1.537AsnGly: 1.537 ± 0.0
1.537AsnHis: 1.537 ± 0.0
3.075AsnIle: 3.075 ± 0.0
5.38AsnLys: 5.38 ± 0.0
5.38AsnLeu: 5.38 ± 0.0
1.537AsnMet: 1.537 ± 0.0
1.922AsnAsn: 1.922 ± 0.0
2.69AsnPro: 2.69 ± 0.0
1.537AsnGln: 1.537 ± 0.0
1.537AsnArg: 1.537 ± 0.0
3.075AsnSer: 3.075 ± 0.0
2.69AsnThr: 2.69 ± 0.0
3.075AsnVal: 3.075 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
1.153AsnTyr: 1.153 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.075ProAla: 3.075 ± 0.0
0.384ProCys: 0.384 ± 0.0
1.922ProAsp: 1.922 ± 0.0
2.69ProGlu: 2.69 ± 0.0
1.153ProPhe: 1.153 ± 0.0
0.384ProGly: 0.384 ± 0.0
1.537ProHis: 1.537 ± 0.0
1.922ProIle: 1.922 ± 0.0
1.153ProLys: 1.153 ± 0.0
3.459ProLeu: 3.459 ± 0.0
0.384ProMet: 0.384 ± 0.0
0.384ProAsn: 0.384 ± 0.0
0.769ProPro: 0.769 ± 0.0
0.769ProGln: 0.769 ± 0.0
1.153ProArg: 1.153 ± 0.0
3.075ProSer: 3.075 ± 0.0
3.075ProThr: 3.075 ± 0.0
3.843ProVal: 3.843 ± 0.0
0.384ProTrp: 0.384 ± 0.0
1.922ProTyr: 1.922 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.612GlnAla: 4.612 ± 0.0
0.769GlnCys: 0.769 ± 0.0
0.769GlnAsp: 0.769 ± 0.0
2.306GlnGlu: 2.306 ± 0.0
2.69GlnPhe: 2.69 ± 0.0
1.922GlnGly: 1.922 ± 0.0
0.384GlnHis: 0.384 ± 0.0
2.306GlnIle: 2.306 ± 0.0
1.153GlnLys: 1.153 ± 0.0
3.843GlnLeu: 3.843 ± 0.0
3.843GlnMet: 3.843 ± 0.0
1.537GlnAsn: 1.537 ± 0.0
1.537GlnPro: 1.537 ± 0.0
1.922GlnGln: 1.922 ± 0.0
3.843GlnArg: 3.843 ± 0.0
1.537GlnSer: 1.537 ± 0.0
2.69GlnThr: 2.69 ± 0.0
1.537GlnVal: 1.537 ± 0.0
1.153GlnTrp: 1.153 ± 0.0
1.153GlnTyr: 1.153 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.843ArgAla: 3.843 ± 0.0
0.769ArgCys: 0.769 ± 0.0
4.228ArgAsp: 4.228 ± 0.0
4.612ArgGlu: 4.612 ± 0.0
2.69ArgPhe: 2.69 ± 0.0
3.075ArgGly: 3.075 ± 0.0
1.922ArgHis: 1.922 ± 0.0
1.537ArgIle: 1.537 ± 0.0
3.843ArgLys: 3.843 ± 0.0
3.843ArgLeu: 3.843 ± 0.0
1.153ArgMet: 1.153 ± 0.0
1.153ArgAsn: 1.153 ± 0.0
1.537ArgPro: 1.537 ± 0.0
1.537ArgGln: 1.537 ± 0.0
3.459ArgArg: 3.459 ± 0.0
1.922ArgSer: 1.922 ± 0.0
1.537ArgThr: 1.537 ± 0.0
5.38ArgVal: 5.38 ± 0.0
0.769ArgTrp: 0.769 ± 0.0
1.153ArgTyr: 1.153 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
2.69SerAla: 2.69 ± 0.0
0.384SerCys: 0.384 ± 0.0
3.459SerAsp: 3.459 ± 0.0
3.075SerGlu: 3.075 ± 0.0
6.533SerPhe: 6.533 ± 0.0
4.228SerGly: 4.228 ± 0.0
1.922SerHis: 1.922 ± 0.0
2.306SerIle: 2.306 ± 0.0
3.459SerLys: 3.459 ± 0.0
6.149SerLeu: 6.149 ± 0.0
1.537SerMet: 1.537 ± 0.0
3.459SerAsn: 3.459 ± 0.0
1.922SerPro: 1.922 ± 0.0
2.69SerGln: 2.69 ± 0.0
3.843SerArg: 3.843 ± 0.0
3.459SerSer: 3.459 ± 0.0
3.459SerThr: 3.459 ± 0.0
2.306SerVal: 2.306 ± 0.0
0.769SerTrp: 0.769 ± 0.0
1.537SerTyr: 1.537 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.843ThrAla: 3.843 ± 0.0
0.384ThrCys: 0.384 ± 0.0
2.69ThrAsp: 2.69 ± 0.0
3.075ThrGlu: 3.075 ± 0.0
0.769ThrPhe: 0.769 ± 0.0
3.075ThrGly: 3.075 ± 0.0
2.69ThrHis: 2.69 ± 0.0
2.69ThrIle: 2.69 ± 0.0
2.69ThrLys: 2.69 ± 0.0
3.459ThrLeu: 3.459 ± 0.0
1.922ThrMet: 1.922 ± 0.0
3.459ThrAsn: 3.459 ± 0.0
3.459ThrPro: 3.459 ± 0.0
1.922ThrGln: 1.922 ± 0.0
1.922ThrArg: 1.922 ± 0.0
3.843ThrSer: 3.843 ± 0.0
4.996ThrThr: 4.996 ± 0.0
4.228ThrVal: 4.228 ± 0.0
0.769ThrTrp: 0.769 ± 0.0
1.537ThrTyr: 1.537 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.765ValAla: 5.765 ± 0.0
1.537ValCys: 1.537 ± 0.0
4.612ValAsp: 4.612 ± 0.0
2.69ValGlu: 2.69 ± 0.0
4.996ValPhe: 4.996 ± 0.0
4.228ValGly: 4.228 ± 0.0
2.306ValHis: 2.306 ± 0.0
2.69ValIle: 2.69 ± 0.0
5.765ValLys: 5.765 ± 0.0
4.612ValLeu: 4.612 ± 0.0
1.922ValMet: 1.922 ± 0.0
2.69ValAsn: 2.69 ± 0.0
1.537ValPro: 1.537 ± 0.0
3.075ValGln: 3.075 ± 0.0
3.075ValArg: 3.075 ± 0.0
2.306ValSer: 2.306 ± 0.0
3.843ValThr: 3.843 ± 0.0
3.459ValVal: 3.459 ± 0.0
0.769ValTrp: 0.769 ± 0.0
2.69ValTyr: 2.69 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.384TrpAla: 0.384 ± 0.0
0.384TrpCys: 0.384 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.384TrpGlu: 0.384 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
1.537TrpGly: 1.537 ± 0.0
0.384TrpHis: 0.384 ± 0.0
0.769TrpIle: 0.769 ± 0.0
0.769TrpLys: 0.769 ± 0.0
2.69TrpLeu: 2.69 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.153TrpAsn: 1.153 ± 0.0
0.769TrpPro: 0.769 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.384TrpArg: 0.384 ± 0.0
0.769TrpSer: 0.769 ± 0.0
0.0TrpThr: 0.0 ± 0.0
1.153TrpVal: 1.153 ± 0.0
0.384TrpTrp: 0.384 ± 0.0
0.769TrpTyr: 0.769 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.69TyrAla: 2.69 ± 0.0
0.384TyrCys: 0.384 ± 0.0
1.922TyrAsp: 1.922 ± 0.0
3.459TyrGlu: 3.459 ± 0.0
0.769TyrPhe: 0.769 ± 0.0
3.075TyrGly: 3.075 ± 0.0
0.0TyrHis: 0.0 ± 0.0
2.306TyrIle: 2.306 ± 0.0
2.69TyrLys: 2.69 ± 0.0
3.075TyrLeu: 3.075 ± 0.0
1.537TyrMet: 1.537 ± 0.0
1.922TyrAsn: 1.922 ± 0.0
0.0TyrPro: 0.0 ± 0.0
0.769TyrGln: 0.769 ± 0.0
1.922TyrArg: 1.922 ± 0.0
1.153TyrSer: 1.153 ± 0.0
1.153TyrThr: 1.153 ± 0.0
2.306TyrVal: 2.306 ± 0.0
1.153TyrTrp: 1.153 ± 0.0
1.153TyrTyr: 1.153 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2603 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski