Amino acid dipepetide frequency for Giant panda circovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.64AlaAla: 12.64 ± 5.207
0.0AlaCys: 0.0 ± 0.0
1.404AlaAsp: 1.404 ± 1.179
1.404AlaGlu: 1.404 ± 1.179
0.0AlaPhe: 0.0 ± 0.0
4.213AlaGly: 4.213 ± 0.418
0.0AlaHis: 0.0 ± 0.0
0.0AlaIle: 0.0 ± 0.0
1.404AlaLys: 1.404 ± 0.798
5.618AlaLeu: 5.618 ± 0.761
1.404AlaMet: 1.404 ± 0.798
1.404AlaAsn: 1.404 ± 0.798
1.404AlaPro: 1.404 ± 0.798
5.618AlaGln: 5.618 ± 1.216
5.618AlaArg: 5.618 ± 0.761
8.427AlaSer: 8.427 ± 2.813
8.427AlaThr: 8.427 ± 2.813
1.404AlaVal: 1.404 ± 0.798
2.809AlaTrp: 2.809 ± 0.38
4.213AlaTyr: 4.213 ± 1.559
0.0AlaXaa: 0.0 ± 0.0
Cys
4.213CysAla: 4.213 ± 1.559
0.0CysCys: 0.0 ± 0.0
1.404CysAsp: 1.404 ± 1.179
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
2.809CysHis: 2.809 ± 2.357
0.0CysIle: 0.0 ± 0.0
1.404CysLys: 1.404 ± 0.798
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
2.809CysArg: 2.809 ± 0.38
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
2.809CysVal: 2.809 ± 0.38
0.0CysTrp: 0.0 ± 0.0
1.404CysTyr: 1.404 ± 1.179
0.0CysXaa: 0.0 ± 0.0
Asp
5.618AspAla: 5.618 ± 2.738
0.0AspCys: 0.0 ± 0.0
0.0AspAsp: 0.0 ± 0.0
4.213AspGlu: 4.213 ± 0.418
2.809AspPhe: 2.809 ± 0.38
4.213AspGly: 4.213 ± 1.559
1.404AspHis: 1.404 ± 1.179
1.404AspIle: 1.404 ± 1.179
0.0AspLys: 0.0 ± 0.0
1.404AspLeu: 1.404 ± 1.179
2.809AspMet: 2.809 ± 1.596
2.809AspAsn: 2.809 ± 1.596
2.809AspPro: 2.809 ± 0.38
1.404AspGln: 1.404 ± 1.179
2.809AspArg: 2.809 ± 0.38
2.809AspSer: 2.809 ± 2.357
7.022AspThr: 7.022 ± 2.014
4.213AspVal: 4.213 ± 0.418
1.404AspTrp: 1.404 ± 1.179
0.0AspTyr: 0.0 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.213GluAla: 4.213 ± 1.559
0.0GluCys: 0.0 ± 0.0
2.809GluAsp: 2.809 ± 2.357
2.809GluGlu: 2.809 ± 0.38
4.213GluPhe: 4.213 ± 1.559
4.213GluGly: 4.213 ± 0.418
2.809GluHis: 2.809 ± 0.38
1.404GluIle: 1.404 ± 0.798
2.809GluLys: 2.809 ± 1.596
4.213GluLeu: 4.213 ± 0.418
1.404GluMet: 1.404 ± 0.784
1.404GluAsn: 1.404 ± 0.798
2.809GluPro: 2.809 ± 0.38
1.404GluGln: 1.404 ± 1.179
4.213GluArg: 4.213 ± 0.418
0.0GluSer: 0.0 ± 0.0
2.809GluThr: 2.809 ± 2.357
5.618GluVal: 5.618 ± 0.761
1.404GluTrp: 1.404 ± 0.798
1.404GluTyr: 1.404 ± 1.179
0.0GluXaa: 0.0 ± 0.0
Phe
4.213PheAla: 4.213 ± 2.395
2.809PheCys: 2.809 ± 0.38
1.404PheAsp: 1.404 ± 0.798
4.213PheGlu: 4.213 ± 1.559
1.404PhePhe: 1.404 ± 0.798
2.809PheGly: 2.809 ± 2.357
0.0PheHis: 0.0 ± 0.0
0.0PheIle: 0.0 ± 0.0
2.809PheLys: 2.809 ± 0.38
0.0PheLeu: 0.0 ± 0.0
1.404PheMet: 1.404 ± 0.798
2.809PheAsn: 2.809 ± 1.596
1.404PhePro: 1.404 ± 0.798
1.404PheGln: 1.404 ± 0.798
1.404PheArg: 1.404 ± 1.179
1.404PheSer: 1.404 ± 0.798
1.404PheThr: 1.404 ± 0.798
1.404PheVal: 1.404 ± 0.798
2.809PheTrp: 2.809 ± 2.357
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
8.427GlyAla: 8.427 ± 4.789
1.404GlyCys: 1.404 ± 0.798
0.0GlyAsp: 0.0 ± 0.0
2.809GlyGlu: 2.809 ± 1.596
4.213GlyPhe: 4.213 ± 0.418
9.831GlyGly: 9.831 ± 3.611
0.0GlyHis: 0.0 ± 0.0
4.213GlyIle: 4.213 ± 0.418
1.404GlyLys: 1.404 ± 1.179
5.618GlyLeu: 5.618 ± 0.761
1.404GlyMet: 1.404 ± 1.179
4.213GlyAsn: 4.213 ± 2.395
1.404GlyPro: 1.404 ± 0.798
7.022GlyGln: 7.022 ± 1.939
5.618GlyArg: 5.618 ± 0.761
7.022GlySer: 7.022 ± 1.939
7.022GlyThr: 7.022 ± 1.939
2.809GlyVal: 2.809 ± 2.357
0.0GlyTrp: 0.0 ± 0.0
4.213GlyTyr: 4.213 ± 0.418
0.0GlyXaa: 0.0 ± 0.0
His
4.213HisAla: 4.213 ± 0.418
1.404HisCys: 1.404 ± 0.798
0.0HisAsp: 0.0 ± 0.0
1.404HisGlu: 1.404 ± 1.179
0.0HisPhe: 0.0 ± 0.0
1.404HisGly: 1.404 ± 0.798
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
1.404HisLeu: 1.404 ± 1.179
0.0HisMet: 0.0 ± 0.0
1.404HisAsn: 1.404 ± 0.798
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
1.404HisArg: 1.404 ± 0.798
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
4.213HisVal: 4.213 ± 1.559
1.404HisTrp: 1.404 ± 1.179
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
0.0IleCys: 0.0 ± 0.0
2.809IleAsp: 2.809 ± 0.38
4.213IleGlu: 4.213 ± 2.395
2.809IlePhe: 2.809 ± 1.596
4.213IleGly: 4.213 ± 0.418
0.0IleHis: 0.0 ± 0.0
2.809IleIle: 2.809 ± 0.38
1.404IleLys: 1.404 ± 0.798
2.809IleLeu: 2.809 ± 0.38
0.0IleMet: 0.0 ± 0.0
4.213IleAsn: 4.213 ± 0.418
0.0IlePro: 0.0 ± 0.0
1.404IleGln: 1.404 ± 0.798
1.404IleArg: 1.404 ± 1.179
4.213IleSer: 4.213 ± 1.559
2.809IleThr: 2.809 ± 0.38
1.404IleVal: 1.404 ± 1.179
1.404IleTrp: 1.404 ± 1.179
1.404IleTyr: 1.404 ± 1.179
0.0IleXaa: 0.0 ± 0.0
Lys
1.404LysAla: 1.404 ± 0.798
0.0LysCys: 0.0 ± 0.0
2.809LysAsp: 2.809 ± 2.357
1.404LysGlu: 1.404 ± 1.179
2.809LysPhe: 2.809 ± 0.38
1.404LysGly: 1.404 ± 1.179
1.404LysHis: 1.404 ± 1.179
4.213LysIle: 4.213 ± 2.395
2.809LysLys: 2.809 ± 0.38
4.213LysLeu: 4.213 ± 2.395
1.404LysMet: 1.404 ± 0.798
0.0LysAsn: 0.0 ± 0.0
0.0LysPro: 0.0 ± 0.0
2.809LysGln: 2.809 ± 1.596
4.213LysArg: 4.213 ± 2.395
2.809LysSer: 2.809 ± 2.357
1.404LysThr: 1.404 ± 0.798
5.618LysVal: 5.618 ± 1.216
0.0LysTrp: 0.0 ± 0.0
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
2.809LeuAla: 2.809 ± 0.38
1.404LeuCys: 1.404 ± 1.179
2.809LeuAsp: 2.809 ± 0.38
2.809LeuGlu: 2.809 ± 1.596
0.0LeuPhe: 0.0 ± 0.0
2.809LeuGly: 2.809 ± 1.596
1.404LeuHis: 1.404 ± 0.798
0.0LeuIle: 0.0 ± 0.0
2.809LeuLys: 2.809 ± 1.596
7.022LeuLeu: 7.022 ± 3.916
1.404LeuMet: 1.404 ± 0.798
2.809LeuAsn: 2.809 ± 1.596
2.809LeuPro: 2.809 ± 0.38
1.404LeuGln: 1.404 ± 0.798
12.64LeuArg: 12.64 ± 2.7
7.022LeuSer: 7.022 ± 1.939
4.213LeuThr: 4.213 ± 3.536
1.404LeuVal: 1.404 ± 0.798
1.404LeuTrp: 1.404 ± 0.798
0.0LeuTyr: 0.0 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.404MetGlu: 1.404 ± 1.179
2.809MetPhe: 2.809 ± 1.596
0.0MetGly: 0.0 ± 0.0
1.404MetHis: 1.404 ± 0.798
0.0MetIle: 0.0 ± 0.0
1.404MetLys: 1.404 ± 0.798
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
1.404MetAsn: 1.404 ± 0.798
4.213MetPro: 4.213 ± 2.395
0.0MetGln: 0.0 ± 0.0
2.809MetArg: 2.809 ± 1.596
2.809MetSer: 2.809 ± 0.38
2.809MetThr: 2.809 ± 1.596
4.213MetVal: 4.213 ± 0.418
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.809AsnAla: 2.809 ± 1.596
0.0AsnCys: 0.0 ± 0.0
1.404AsnAsp: 1.404 ± 0.798
0.0AsnGlu: 0.0 ± 0.0
1.404AsnPhe: 1.404 ± 0.798
5.618AsnGly: 5.618 ± 3.193
1.404AsnHis: 1.404 ± 1.179
2.809AsnIle: 2.809 ± 0.38
1.404AsnLys: 1.404 ± 0.798
1.404AsnLeu: 1.404 ± 1.179
1.404AsnMet: 1.404 ± 1.305
1.404AsnAsn: 1.404 ± 0.798
5.618AsnPro: 5.618 ± 0.761
2.809AsnGln: 2.809 ± 0.38
5.618AsnArg: 5.618 ± 3.193
2.809AsnSer: 2.809 ± 0.38
4.213AsnThr: 4.213 ± 0.418
4.213AsnVal: 4.213 ± 0.418
0.0AsnTrp: 0.0 ± 0.0
1.404AsnTyr: 1.404 ± 0.798
0.0AsnXaa: 0.0 ± 0.0
Pro
1.404ProAla: 1.404 ± 0.798
0.0ProCys: 0.0 ± 0.0
2.809ProAsp: 2.809 ± 0.38
4.213ProGlu: 4.213 ± 1.559
0.0ProPhe: 0.0 ± 0.0
4.213ProGly: 4.213 ± 0.418
0.0ProHis: 0.0 ± 0.0
0.0ProIle: 0.0 ± 0.0
1.404ProLys: 1.404 ± 1.179
1.404ProLeu: 1.404 ± 1.179
0.0ProMet: 0.0 ± 0.0
4.213ProAsn: 4.213 ± 0.418
0.0ProPro: 0.0 ± 0.0
0.0ProGln: 0.0 ± 0.0
1.404ProArg: 1.404 ± 0.798
2.809ProSer: 2.809 ± 0.38
4.213ProThr: 4.213 ± 0.418
7.022ProVal: 7.022 ± 0.037
1.404ProTrp: 1.404 ± 1.179
1.404ProTyr: 1.404 ± 0.798
0.0ProXaa: 0.0 ± 0.0
Gln
1.404GlnAla: 1.404 ± 0.798
0.0GlnCys: 0.0 ± 0.0
5.618GlnAsp: 5.618 ± 1.216
4.213GlnGlu: 4.213 ± 1.559
2.809GlnPhe: 2.809 ± 0.38
4.213GlnGly: 4.213 ± 0.418
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
1.404GlnLys: 1.404 ± 0.798
4.213GlnLeu: 4.213 ± 1.559
1.404GlnMet: 1.404 ± 0.798
4.213GlnAsn: 4.213 ± 2.395
1.404GlnPro: 1.404 ± 1.179
1.404GlnGln: 1.404 ± 1.179
1.404GlnArg: 1.404 ± 1.179
2.809GlnSer: 2.809 ± 0.38
1.404GlnThr: 1.404 ± 0.798
1.404GlnVal: 1.404 ± 1.179
2.809GlnTrp: 2.809 ± 0.38
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.809ArgAla: 2.809 ± 0.38
2.809ArgCys: 2.809 ± 2.357
4.213ArgAsp: 4.213 ± 1.559
1.404ArgGlu: 1.404 ± 1.179
0.0ArgPhe: 0.0 ± 0.0
4.213ArgGly: 4.213 ± 0.418
0.0ArgHis: 0.0 ± 0.0
2.809ArgIle: 2.809 ± 0.38
2.809ArgLys: 2.809 ± 0.38
4.213ArgLeu: 4.213 ± 0.418
1.404ArgMet: 1.404 ± 0.798
7.022ArgAsn: 7.022 ± 0.037
4.213ArgPro: 4.213 ± 0.418
2.809ArgGln: 2.809 ± 0.38
21.067ArgArg: 21.067 ± 2.089
9.831ArgSer: 9.831 ± 1.634
11.236ArgThr: 11.236 ± 0.455
8.427ArgVal: 8.427 ± 2.813
1.404ArgTrp: 1.404 ± 1.179
5.618ArgTyr: 5.618 ± 0.761
0.0ArgXaa: 0.0 ± 0.0
Ser
1.404SerAla: 1.404 ± 1.179
2.809SerCys: 2.809 ± 2.357
7.022SerAsp: 7.022 ± 1.939
5.618SerGlu: 5.618 ± 2.738
1.404SerPhe: 1.404 ± 0.798
5.618SerGly: 5.618 ± 1.216
0.0SerHis: 0.0 ± 0.0
2.809SerIle: 2.809 ± 1.596
4.213SerLys: 4.213 ± 1.559
2.809SerLeu: 2.809 ± 1.596
0.0SerMet: 0.0 ± 0.0
4.213SerAsn: 4.213 ± 3.536
1.404SerPro: 1.404 ± 0.798
1.404SerGln: 1.404 ± 1.179
9.831SerArg: 9.831 ± 2.32
5.618SerSer: 5.618 ± 0.761
11.236SerThr: 11.236 ± 6.386
2.809SerVal: 2.809 ± 0.38
0.0SerTrp: 0.0 ± 0.0
2.809SerTyr: 2.809 ± 0.38
0.0SerXaa: 0.0 ± 0.0
Thr
7.022ThrAla: 7.022 ± 2.014
2.809ThrCys: 2.809 ± 0.38
2.809ThrAsp: 2.809 ± 0.38
2.809ThrGlu: 2.809 ± 1.596
4.213ThrPhe: 4.213 ± 2.395
5.618ThrGly: 5.618 ± 0.761
1.404ThrHis: 1.404 ± 0.798
4.213ThrIle: 4.213 ± 1.559
4.213ThrLys: 4.213 ± 1.559
7.022ThrLeu: 7.022 ± 2.014
4.213ThrMet: 4.213 ± 2.395
0.0ThrAsn: 0.0 ± 0.0
2.809ThrPro: 2.809 ± 0.38
4.213ThrGln: 4.213 ± 0.418
4.213ThrArg: 4.213 ± 1.559
5.618ThrSer: 5.618 ± 1.216
5.618ThrThr: 5.618 ± 3.193
5.618ThrVal: 5.618 ± 1.216
1.404ThrTrp: 1.404 ± 0.798
5.618ThrTyr: 5.618 ± 1.216
0.0ThrXaa: 0.0 ± 0.0
Val
2.809ValAla: 2.809 ± 0.38
0.0ValCys: 0.0 ± 0.0
4.213ValAsp: 4.213 ± 2.395
5.618ValGlu: 5.618 ± 0.761
2.809ValPhe: 2.809 ± 2.357
11.236ValGly: 11.236 ± 3.498
1.404ValHis: 1.404 ± 0.798
9.831ValIle: 9.831 ± 0.343
5.618ValLys: 5.618 ± 1.216
4.213ValLeu: 4.213 ± 2.395
1.404ValMet: 1.404 ± 1.179
2.809ValAsn: 2.809 ± 0.38
1.404ValPro: 1.404 ± 1.179
4.213ValGln: 4.213 ± 0.418
4.213ValArg: 4.213 ± 0.418
2.809ValSer: 2.809 ± 1.596
1.404ValThr: 1.404 ± 0.798
8.427ValVal: 8.427 ± 3.118
0.0ValTrp: 0.0 ± 0.0
4.213ValTyr: 4.213 ± 0.418
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
2.809TrpAsp: 2.809 ± 2.357
1.404TrpGlu: 1.404 ± 1.179
0.0TrpPhe: 0.0 ± 0.0
1.404TrpGly: 1.404 ± 1.179
0.0TrpHis: 0.0 ± 0.0
2.809TrpIle: 2.809 ± 2.357
0.0TrpLys: 0.0 ± 0.0
1.404TrpLeu: 1.404 ± 1.179
0.0TrpMet: 0.0 ± 0.0
1.404TrpAsn: 1.404 ± 0.798
0.0TrpPro: 0.0 ± 0.0
1.404TrpGln: 1.404 ± 1.179
1.404TrpArg: 1.404 ± 0.798
0.0TrpSer: 0.0 ± 0.0
2.809TrpThr: 2.809 ± 0.38
2.809TrpVal: 2.809 ± 1.596
1.404TrpTrp: 1.404 ± 0.798
1.404TrpTyr: 1.404 ± 1.179
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.0TyrAla: 0.0 ± 0.0
1.404TyrCys: 1.404 ± 1.179
2.809TyrAsp: 2.809 ± 1.596
0.0TyrGlu: 0.0 ± 0.0
1.404TyrPhe: 1.404 ± 1.179
1.404TyrGly: 1.404 ± 0.798
2.809TyrHis: 2.809 ± 1.596
0.0TyrIle: 0.0 ± 0.0
1.404TyrLys: 1.404 ± 0.798
0.0TyrLeu: 0.0 ± 0.0
2.809TyrMet: 2.809 ± 1.596
1.404TyrAsn: 1.404 ± 1.179
4.213TyrPro: 4.213 ± 3.536
1.404TyrGln: 1.404 ± 0.798
4.213TyrArg: 4.213 ± 0.418
4.213TyrSer: 4.213 ± 1.559
1.404TyrThr: 1.404 ± 0.798
2.809TyrVal: 2.809 ± 2.357
1.404TyrTrp: 1.404 ± 1.179
1.404TyrTyr: 1.404 ± 0.798
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (713 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski