Avon-Heathcote Estuary associated circular virus 18

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae; Avon-Heathcote Estuary associated circular virus 17

Average proteome isoelectric point is 7.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C5I9U1|A0A0C5I9U1_9CIRC Putative capsid protein OS=Avon-Heathcote Estuary associated circular virus 18 OX=1618241 PE=4 SV=1
MM1 pKa = 7.39TARR4 pKa = 11.84NWVFTINNHH13 pKa = 5.94FSIDD17 pKa = 3.89LEE19 pKa = 4.24EE20 pKa = 4.17EE21 pKa = 3.86TWNNNLKK28 pKa = 10.67LLIAVKK34 pKa = 10.16EE35 pKa = 4.11VGEE38 pKa = 4.14QGTEE42 pKa = 3.73HH43 pKa = 6.09LQGYY47 pKa = 9.67LEE49 pKa = 5.39LIQPRR54 pKa = 11.84RR55 pKa = 11.84FSWVKK60 pKa = 9.74EE61 pKa = 3.94RR62 pKa = 11.84LPLAHH67 pKa = 6.77LEE69 pKa = 4.01KK70 pKa = 10.64RR71 pKa = 11.84RR72 pKa = 11.84GSKK75 pKa = 9.68KK76 pKa = 9.84QAIQYY81 pKa = 8.36CLKK84 pKa = 9.93TISLPSQQCSSPSNTSDD101 pKa = 3.53TSPQDD106 pKa = 3.17VDD108 pKa = 3.53STIPLTIIYY117 pKa = 9.0PPDD120 pKa = 3.45MNLSDD125 pKa = 5.66LYY127 pKa = 11.53ADD129 pKa = 3.75YY130 pKa = 11.06CRR132 pKa = 11.84SKK134 pKa = 8.78QTKK137 pKa = 9.35RR138 pKa = 11.84QILLAEE144 pKa = 4.37VRR146 pKa = 11.84QKK148 pKa = 11.09LSEE151 pKa = 4.23GVDD154 pKa = 3.46DD155 pKa = 3.91LTIANEE161 pKa = 4.11YY162 pKa = 9.85FDD164 pKa = 4.34VWVSNYY170 pKa = 10.11RR171 pKa = 11.84AFEE174 pKa = 4.1RR175 pKa = 11.84YY176 pKa = 7.39RR177 pKa = 11.84TLITPPRR184 pKa = 11.84NHH186 pKa = 6.44EE187 pKa = 4.1VNVIVIQGPTGTGKK201 pKa = 10.7SKK203 pKa = 9.63WCLDD207 pKa = 4.09NYY209 pKa = 10.08PNAYY213 pKa = 8.18WKK215 pKa = 10.05QRR217 pKa = 11.84SNWWDD222 pKa = 3.77GYY224 pKa = 10.33SGHH227 pKa = 6.99DD228 pKa = 3.28TVIIDD233 pKa = 4.6EE234 pKa = 4.88FYY236 pKa = 10.81GWLPFDD242 pKa = 4.26LLLRR246 pKa = 11.84VCDD249 pKa = 4.56RR250 pKa = 11.84YY251 pKa = 10.46PLLVEE256 pKa = 4.41SKK258 pKa = 10.15GGQIQFVAKK267 pKa = 9.65TIIITSNSVPSSWYY281 pKa = 8.66RR282 pKa = 11.84NSYY285 pKa = 9.31FDD287 pKa = 3.29SFVRR291 pKa = 11.84RR292 pKa = 11.84VSKK295 pKa = 10.47WMVFPIWGDD304 pKa = 3.29QLSFTDD310 pKa = 3.83YY311 pKa = 11.26SEE313 pKa = 5.89AIAHH317 pKa = 6.14FVNNYY322 pKa = 8.86

Molecular weight: 37.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C5I9U1|A0A0C5I9U1_9CIRC Putative capsid protein OS=Avon-Heathcote Estuary associated circular virus 18 OX=1618241 PE=4 SV=1
MM1 pKa = 8.17PYY3 pKa = 9.98RR4 pKa = 11.84PKK6 pKa = 10.26PYY8 pKa = 9.88SRR10 pKa = 11.84SLVDD14 pKa = 2.84YY15 pKa = 10.56RR16 pKa = 11.84RR17 pKa = 11.84ASRR20 pKa = 11.84INYY23 pKa = 9.74RR24 pKa = 11.84IGARR28 pKa = 11.84LANRR32 pKa = 11.84VGMSFTKK39 pKa = 10.01TKK41 pKa = 10.5RR42 pKa = 11.84KK43 pKa = 9.36RR44 pKa = 11.84QTSGRR49 pKa = 11.84GVTFQRR55 pKa = 11.84DD56 pKa = 3.0QEE58 pKa = 4.3LIYY61 pKa = 10.33RR62 pKa = 11.84KK63 pKa = 9.76RR64 pKa = 11.84RR65 pKa = 11.84MPRR68 pKa = 11.84KK69 pKa = 9.4RR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84RR73 pKa = 11.84WKK75 pKa = 9.22NFIRR79 pKa = 11.84KK80 pKa = 8.66SVAASEE86 pKa = 4.31KK87 pKa = 8.8TLGSRR92 pKa = 11.84TVVRR96 pKa = 11.84NQQFSFAVSGVNANSEE112 pKa = 4.53DD113 pKa = 3.63IVGQLALYY121 pKa = 9.81AVQNGGNEE129 pKa = 3.98YY130 pKa = 10.74LRR132 pKa = 11.84DD133 pKa = 3.73LNRR136 pKa = 11.84ICSDD140 pKa = 3.33TDD142 pKa = 3.24VSTSGKK148 pKa = 10.58LIFQSGVMDD157 pKa = 3.55ATITNISSSDD167 pKa = 3.42DD168 pKa = 3.38QDD170 pKa = 4.07RR171 pKa = 11.84KK172 pKa = 10.75DD173 pKa = 3.67VPIEE177 pKa = 3.57LDD179 pKa = 3.03IYY181 pKa = 10.37EE182 pKa = 4.14VSARR186 pKa = 11.84RR187 pKa = 11.84NFEE190 pKa = 3.9KK191 pKa = 10.58GTGDD195 pKa = 5.35KK196 pKa = 11.33GLLDD200 pKa = 4.14CFAEE204 pKa = 4.84GFLDD208 pKa = 4.3QGLLSTTGTDD218 pKa = 3.31TPLSLTTRR226 pKa = 11.84GSTPWDD232 pKa = 3.73CPQALSMYY240 pKa = 10.21RR241 pKa = 11.84LKK243 pKa = 10.22IWKK246 pKa = 6.87KK247 pKa = 7.45TKK249 pKa = 9.7YY250 pKa = 9.4RR251 pKa = 11.84LSGGQSLSYY260 pKa = 10.66QMRR263 pKa = 11.84DD264 pKa = 3.4PKK266 pKa = 10.48RR267 pKa = 11.84HH268 pKa = 4.78VMEE271 pKa = 4.74KK272 pKa = 10.52GYY274 pKa = 10.81VGEE277 pKa = 4.23LTGSNLPGVTRR288 pKa = 11.84WLILIAKK295 pKa = 7.95PIVGFNVNFNGIAEE309 pKa = 4.1IRR311 pKa = 11.84VGVTRR316 pKa = 11.84KK317 pKa = 9.85YY318 pKa = 10.59LYY320 pKa = 10.51KK321 pKa = 10.65LNEE324 pKa = 3.96RR325 pKa = 11.84NEE327 pKa = 4.35DD328 pKa = 3.17KK329 pKa = 10.99DD330 pKa = 3.95ALVTT334 pKa = 3.91

Molecular weight: 38.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

656

322

334

328.0

37.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.268 ± 0.376

1.22 ± 0.231

5.945 ± 0.031

4.573 ± 0.491

3.659 ± 0.263

6.25 ± 1.321

1.067 ± 0.553

5.945 ± 0.616

5.945 ± 0.678

8.537 ± 0.11

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.524 ± 0.412

5.488 ± 0.287

4.116 ± 0.592

4.421 ± 0.381

8.537 ± 1.831

8.384 ± 0.216

6.402 ± 0.348

6.555 ± 0.023

2.439 ± 0.894

4.726 ± 0.385
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski