Capybara microvirus Cap1_SP_259

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4M0|A0A4P8W4M0_9VIRU Replication initiator protein OS=Capybara microvirus Cap1_SP_259 OX=2585419 PE=4 SV=1
MM1 pKa = 7.42KK2 pKa = 10.48FSFKK6 pKa = 10.15RR7 pKa = 11.84SKK9 pKa = 9.24FTPHH13 pKa = 6.57SSRR16 pKa = 11.84IASLRR21 pKa = 11.84AGKK24 pKa = 9.92IYY26 pKa = 9.92PILVRR31 pKa = 11.84EE32 pKa = 4.55MYY34 pKa = 10.26PGDD37 pKa = 4.54TITIWHH43 pKa = 5.88QALLRR48 pKa = 11.84TAPMLFPLYY57 pKa = 10.91SPMKK61 pKa = 9.35LTFDD65 pKa = 3.61YY66 pKa = 10.04FYY68 pKa = 11.04SPNRR72 pKa = 11.84IVWKK76 pKa = 10.49GDD78 pKa = 3.2EE79 pKa = 4.36TKK81 pKa = 10.56DD82 pKa = 2.89WSAFITGSINGKK94 pKa = 10.04KK95 pKa = 9.65IEE97 pKa = 5.27DD98 pKa = 3.85PDD100 pKa = 4.09KK101 pKa = 11.1LPKK104 pKa = 10.21LPYY107 pKa = 8.66ITVPEE112 pKa = 4.55GGFGKK117 pKa = 10.58SSLADD122 pKa = 3.35YY123 pKa = 11.14LGFDD127 pKa = 3.57PSDD130 pKa = 3.45RR131 pKa = 11.84LEE133 pKa = 4.17GAKK136 pKa = 10.41LSALRR141 pKa = 11.84FRR143 pKa = 11.84HH144 pKa = 4.41YY145 pKa = 10.98QKK147 pKa = 10.59IISDD151 pKa = 4.01YY152 pKa = 10.71YY153 pKa = 11.07ADD155 pKa = 4.4EE156 pKa = 4.69NLSTMPEE163 pKa = 3.46IAYY166 pKa = 8.92TEE168 pKa = 4.67GEE170 pKa = 4.3DD171 pKa = 3.64TTTSLDD177 pKa = 3.57LFTRR181 pKa = 11.84CWNKK185 pKa = 10.54DD186 pKa = 3.06RR187 pKa = 11.84FTTASLDD194 pKa = 3.7PSSGEE199 pKa = 3.87SVMIPIGNSAPVVGNGNSLGLTNGVSDD226 pKa = 4.59FGLVSGQLYY235 pKa = 10.33INTDD239 pKa = 3.28RR240 pKa = 11.84EE241 pKa = 4.61GVLNTSQSTYY251 pKa = 11.2ALPASGLTEE260 pKa = 3.88RR261 pKa = 11.84AADD264 pKa = 3.57INNSTTALGVSKK276 pKa = 10.6DD277 pKa = 3.59SSKK280 pKa = 11.3SGLVADD286 pKa = 5.23LEE288 pKa = 4.44AATGIGVDD296 pKa = 3.58EE297 pKa = 4.46LHH299 pKa = 7.22FLVQLQRR306 pKa = 11.84LNQQDD311 pKa = 4.34AFWGTRR317 pKa = 11.84DD318 pKa = 3.6FEE320 pKa = 4.69CIYY323 pKa = 9.6THH325 pKa = 6.74FGVVIPDD332 pKa = 3.44TRR334 pKa = 11.84LQRR337 pKa = 11.84ATFLGRR343 pKa = 11.84SCVDD347 pKa = 3.17VNFSEE352 pKa = 4.81VLQTSQSTDD361 pKa = 2.6SSPQGNITGHH371 pKa = 6.69ALAVDD376 pKa = 4.07QNNPIHH382 pKa = 6.21FNCSEE387 pKa = 3.85HH388 pKa = 7.8GYY390 pKa = 10.3IFVLVNIQPIAQYY403 pKa = 10.31CQGIPRR409 pKa = 11.84DD410 pKa = 3.2AMYY413 pKa = 10.61RR414 pKa = 11.84DD415 pKa = 4.28RR416 pKa = 11.84YY417 pKa = 10.44SYY419 pKa = 8.69MWPEE423 pKa = 4.0FSEE426 pKa = 4.25TGQQEE431 pKa = 4.21IYY433 pKa = 10.41SAEE436 pKa = 4.13LYY438 pKa = 8.24ATRR441 pKa = 11.84QNIDD445 pKa = 2.76EE446 pKa = 4.36RR447 pKa = 11.84KK448 pKa = 8.91IFGYY452 pKa = 9.14EE453 pKa = 3.34PRR455 pKa = 11.84FNHH458 pKa = 6.46LRR460 pKa = 11.84FGDD463 pKa = 3.86KK464 pKa = 9.44TVHH467 pKa = 6.85GDD469 pKa = 3.57FRR471 pKa = 11.84DD472 pKa = 3.81NLSGYY477 pKa = 7.79HH478 pKa = 4.92TARR481 pKa = 11.84IFSEE485 pKa = 4.26EE486 pKa = 4.16PEE488 pKa = 4.18LNEE491 pKa = 3.62NFIRR495 pKa = 11.84ADD497 pKa = 3.06VTQRR501 pKa = 11.84MFAVNTQDD509 pKa = 4.01IDD511 pKa = 4.03QYY513 pKa = 8.24WLRR516 pKa = 11.84VEE518 pKa = 4.67FDD520 pKa = 3.14INHH523 pKa = 5.22VRR525 pKa = 11.84RR526 pKa = 11.84LPKK529 pKa = 9.82WPTPSAIGKK538 pKa = 8.66LFF540 pKa = 3.56

Molecular weight: 61.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W881|A0A4P8W881_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_259 OX=2585419 PE=4 SV=1
MM1 pKa = 7.54NISSFLSTRR10 pKa = 11.84KK11 pKa = 9.86AFRR14 pKa = 11.84EE15 pKa = 4.04FKK17 pKa = 10.83DD18 pKa = 3.47FGVFLDD24 pKa = 3.44VDD26 pKa = 3.61KK27 pKa = 11.45KK28 pKa = 10.48NRR30 pKa = 11.84CRR32 pKa = 11.84LMLRR36 pKa = 11.84HH37 pKa = 6.14IPSGRR42 pKa = 11.84VIEE45 pKa = 4.06LRR47 pKa = 11.84KK48 pKa = 9.47FVNVQSYY55 pKa = 7.83QRR57 pKa = 11.84FLVQGVFLRR66 pKa = 11.84LIADD70 pKa = 3.59SASVNKK76 pKa = 10.27ANHH79 pKa = 6.21SYY81 pKa = 11.25INVCNTLEE89 pKa = 3.96DD90 pKa = 4.74LIIKK94 pKa = 9.21EE95 pKa = 4.36SQQ97 pKa = 2.76

Molecular weight: 11.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1277

97

540

255.4

28.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.987 ± 2.329

1.41 ± 0.696

6.813 ± 0.53

4.777 ± 0.844

5.873 ± 0.815

6.265 ± 0.836

2.271 ± 0.304

5.012 ± 0.858

5.717 ± 0.997

8.771 ± 0.38

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.41 ± 0.223

5.951 ± 1.054

3.289 ± 1.052

3.994 ± 0.662

6.108 ± 0.95

8.457 ± 1.064

5.247 ± 1.007

5.09 ± 0.77

1.018 ± 0.313

4.542 ± 1.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski