Ilumatobacter fluminis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Ilumatobacteraceae; Ilumatobacter

Average proteome isoelectric point is 5.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4258 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R7HXF4|A0A4R7HXF4_9ACTN NADH-quinone oxidoreductase subunit H OS=Ilumatobacter fluminis OX=467091 GN=nuoH PE=3 SV=1
MM1 pKa = 7.52TEE3 pKa = 4.44LANQMVMARR12 pKa = 11.84DD13 pKa = 3.76SDD15 pKa = 3.92QLDD18 pKa = 5.02LIDD21 pKa = 5.11DD22 pKa = 5.18CIDD25 pKa = 3.68TVPAIYY31 pKa = 10.51DD32 pKa = 3.52GTAPNCWTTCPPAEE46 pKa = 4.15RR47 pKa = 11.84TFHH50 pKa = 7.09LDD52 pKa = 2.9VARR55 pKa = 11.84NDD57 pKa = 3.45QLTNIQDD64 pKa = 3.96DD65 pKa = 4.25VWWRR69 pKa = 11.84TTLPVTYY76 pKa = 9.18VTDD79 pKa = 4.12DD80 pKa = 4.34GIIDD84 pKa = 3.61VTEE87 pKa = 3.88YY88 pKa = 10.37WSIRR92 pKa = 11.84QVDD95 pKa = 3.63DD96 pKa = 3.9RR97 pKa = 11.84FTVDD101 pKa = 2.95EE102 pKa = 5.29FEE104 pKa = 4.08IQTPIMQRR112 pKa = 11.84QSATDD117 pKa = 3.03ILTVYY122 pKa = 9.78FAHH125 pKa = 7.42IDD127 pKa = 3.68NEE129 pKa = 4.05NWAQAADD136 pKa = 4.53LLTQASSAPFGDD148 pKa = 4.76RR149 pKa = 11.84LDD151 pKa = 4.11LQQLGANSYY160 pKa = 10.32DD161 pKa = 3.37QGDD164 pKa = 3.72IADD167 pKa = 5.42ALARR171 pKa = 11.84WCADD175 pKa = 3.06GCDD178 pKa = 3.79TTPPSAAEE186 pKa = 3.79LTFTGGYY193 pKa = 9.74EE194 pKa = 4.03LTRR197 pKa = 11.84NAQTIRR203 pKa = 11.84VTWYY207 pKa = 7.94EE208 pKa = 3.96GAYY211 pKa = 9.97GIYY214 pKa = 10.25GPPLRR219 pKa = 5.81

Molecular weight: 24.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R7I137|A0A4R7I137_9ACTN Lipoyl synthase OS=Ilumatobacter fluminis OX=467091 GN=lipA PE=3 SV=1
MM1 pKa = 7.79RR2 pKa = 11.84PRR4 pKa = 11.84RR5 pKa = 11.84SRR7 pKa = 11.84SDD9 pKa = 3.02PPTRR13 pKa = 11.84SRR15 pKa = 11.84GSRR18 pKa = 11.84TPPALTPTRR27 pKa = 11.84PHH29 pKa = 6.34RR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84PRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84HH40 pKa = 4.25HH41 pKa = 5.95RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84YY46 pKa = 9.94DD47 pKa = 3.44PPLHH51 pKa = 6.35RR52 pKa = 11.84AHH54 pKa = 6.7GRR56 pKa = 11.84RR57 pKa = 11.84HH58 pKa = 3.6VRR60 pKa = 11.84RR61 pKa = 11.84RR62 pKa = 11.84TGHH65 pKa = 5.81RR66 pKa = 11.84RR67 pKa = 11.84NHH69 pKa = 4.94RR70 pKa = 11.84HH71 pKa = 4.19RR72 pKa = 11.84HH73 pKa = 4.84HH74 pKa = 6.84RR75 pKa = 11.84HH76 pKa = 4.81HH77 pKa = 6.29HH78 pKa = 4.41HH79 pKa = 5.95HH80 pKa = 5.86RR81 pKa = 11.84HH82 pKa = 4.86RR83 pKa = 11.84RR84 pKa = 11.84SRR86 pKa = 11.84PRR88 pKa = 11.84QARR91 pKa = 11.84CHH93 pKa = 5.95RR94 pKa = 11.84PLRR97 pKa = 11.84RR98 pKa = 11.84HH99 pKa = 5.7RR100 pKa = 11.84RR101 pKa = 11.84RR102 pKa = 11.84HH103 pKa = 4.79QRR105 pKa = 11.84DD106 pKa = 3.82SVHH109 pKa = 6.42LWPPTSPRR117 pKa = 11.84FGRR120 pKa = 11.84SICRR124 pKa = 11.84RR125 pKa = 11.84VACRR129 pKa = 11.84SLRR132 pKa = 11.84SRR134 pKa = 11.84RR135 pKa = 11.84SQNRR139 pKa = 11.84RR140 pKa = 11.84RR141 pKa = 11.84RR142 pKa = 11.84RR143 pKa = 11.84VRR145 pKa = 11.84HH146 pKa = 5.79SSATSNDD153 pKa = 3.27CPPRR157 pKa = 11.84RR158 pKa = 11.84RR159 pKa = 11.84HH160 pKa = 4.85RR161 pKa = 11.84VRR163 pKa = 11.84RR164 pKa = 11.84RR165 pKa = 11.84HH166 pKa = 4.05RR167 pKa = 11.84HH168 pKa = 4.42RR169 pKa = 11.84RR170 pKa = 11.84LDD172 pKa = 3.28RR173 pKa = 11.84GRR175 pKa = 11.84TVPPASRR182 pKa = 11.84RR183 pKa = 11.84QRR185 pKa = 11.84RR186 pKa = 11.84PVVPRR191 pKa = 11.84PTPGRR196 pKa = 11.84PGASSRR202 pKa = 11.84RR203 pKa = 11.84RR204 pKa = 11.84RR205 pKa = 11.84PLRR208 pKa = 11.84DD209 pKa = 3.1PARR212 pKa = 11.84RR213 pKa = 11.84PSGRR217 pKa = 11.84PASSDD222 pKa = 2.81GSAHH226 pKa = 6.56HH227 pKa = 6.61SPPGRR232 pKa = 11.84RR233 pKa = 11.84TWSIARR239 pKa = 11.84PHH241 pKa = 5.4PTPRR245 pKa = 11.84RR246 pKa = 11.84RR247 pKa = 11.84RR248 pKa = 11.84SPPPPARR255 pKa = 11.84PRR257 pKa = 11.84HH258 pKa = 4.77RR259 pKa = 11.84HH260 pKa = 4.73FLSRR264 pKa = 11.84PPGLRR269 pKa = 11.84RR270 pKa = 11.84RR271 pKa = 11.84DD272 pKa = 3.49RR273 pKa = 11.84ASSRR277 pKa = 3.37

Molecular weight: 33.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4258

0

4258

1475297

33

3915

346.5

37.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.18 ± 0.048

0.804 ± 0.011

7.852 ± 0.048

5.869 ± 0.037

3.142 ± 0.022

8.943 ± 0.036

2.141 ± 0.021

4.41 ± 0.028

1.605 ± 0.027

9.138 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.968 ± 0.022

2.095 ± 0.022

5.6 ± 0.029

2.546 ± 0.017

7.037 ± 0.054

5.467 ± 0.031

6.465 ± 0.055

9.248 ± 0.037

1.549 ± 0.018

1.94 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski