Lyngbya confervoides BDU141951

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoriaceae; Lyngbya; Lyngbya confervoides

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6060 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C1UPF6|A0A0C1UPF6_9CYAN DNA gyrase subunit B OS=Lyngbya confervoides BDU141951 OX=1574623 GN=gyrB PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 10.53LFVGLLSAGLVLAGGLSFASPSYY25 pKa = 9.33GQAVVATPRR34 pKa = 11.84SPALDD39 pKa = 3.28IQSTQIQYY47 pKa = 11.02LEE49 pKa = 4.14EE50 pKa = 5.65LDD52 pKa = 4.52LLVFEE57 pKa = 4.46QQLAGVVGATLPQSAGQLDD76 pKa = 4.16GAPVLGYY83 pKa = 9.39VFPTTLSPAAVGFGGVDD100 pKa = 4.43GILALAVTSHH110 pKa = 7.56PDD112 pKa = 3.75FDD114 pKa = 5.28DD115 pKa = 3.96TPLWDD120 pKa = 4.15EE121 pKa = 5.84DD122 pKa = 3.74NDD124 pKa = 3.86ADD126 pKa = 4.1YY127 pKa = 11.77ANDD130 pKa = 3.53GVIWHH135 pKa = 5.8THH137 pKa = 3.78WVVLTGDD144 pKa = 3.31NRR146 pKa = 11.84VPGGLSVAEE155 pKa = 4.6FAADD159 pKa = 3.65DD160 pKa = 4.32ASVVMPPTNPGMTIYY175 pKa = 10.56LDD177 pKa = 3.61SPGFSVVTDD186 pKa = 3.48QEE188 pKa = 4.47TLRR191 pKa = 11.84VLVPAQRR198 pKa = 11.84VDD200 pKa = 3.07HH201 pKa = 6.0NTDD204 pKa = 3.51FNFDD208 pKa = 3.13AVTAYY213 pKa = 9.25MQVNTSDD220 pKa = 3.33ASRR223 pKa = 11.84PTLGVYY229 pKa = 8.76EE230 pKa = 4.49VYY232 pKa = 10.71SVGSGDD238 pKa = 3.62LSLPYY243 pKa = 10.07GVRR246 pKa = 11.84HH247 pKa = 6.69DD248 pKa = 4.37ADD250 pKa = 3.27

Molecular weight: 26.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C1USQ4|A0A0C1USQ4_9CYAN Multicopper oxidase OS=Lyngbya confervoides BDU141951 OX=1574623 GN=QQ91_30110 PE=4 SV=1
MM1 pKa = 7.38TEE3 pKa = 3.43ITRR6 pKa = 11.84IQAALRR12 pKa = 11.84PHH14 pKa = 6.92LSWHH18 pKa = 5.47GARR21 pKa = 11.84LTFLALFLVALFRR34 pKa = 11.84VEE36 pKa = 4.29TVNLEE41 pKa = 3.84RR42 pKa = 11.84LASVFANRR50 pKa = 11.84AQSASNHH57 pKa = 4.98KK58 pKa = 10.17RR59 pKa = 11.84LTRR62 pKa = 11.84FFRR65 pKa = 11.84KK66 pKa = 9.45FVIDD70 pKa = 3.87FEE72 pKa = 5.11EE73 pKa = 4.21IAQAVVSWSQIPEE86 pKa = 3.93PWTLSLDD93 pKa = 3.51RR94 pKa = 11.84TNWSFGTVNFNILMLGIVHH113 pKa = 6.89EE114 pKa = 5.01GVAFPVMWTMLDD126 pKa = 3.09KK127 pKa = 11.06RR128 pKa = 11.84GNSNSDD134 pKa = 2.72EE135 pKa = 4.45RR136 pKa = 11.84MDD138 pKa = 3.79LLEE141 pKa = 4.09RR142 pKa = 11.84FEE144 pKa = 5.07RR145 pKa = 11.84VFPNAQIRR153 pKa = 11.84CLTGDD158 pKa = 3.43RR159 pKa = 11.84EE160 pKa = 4.39FVGRR164 pKa = 11.84EE165 pKa = 3.49WCSFLLVPDD174 pKa = 5.78AIPFRR179 pKa = 11.84LRR181 pKa = 11.84LRR183 pKa = 11.84HH184 pKa = 5.91SDD186 pKa = 3.76RR187 pKa = 11.84ISSRR191 pKa = 11.84SGKK194 pKa = 8.75QRR196 pKa = 11.84QTGEE200 pKa = 3.96RR201 pKa = 11.84VFANLKK207 pKa = 10.06VGEE210 pKa = 3.98QRR212 pKa = 11.84HH213 pKa = 5.39LSGKK217 pKa = 7.9RR218 pKa = 11.84WVWGRR223 pKa = 11.84RR224 pKa = 11.84VYY226 pKa = 10.38IVATRR231 pKa = 11.84LEE233 pKa = 4.54DD234 pKa = 4.14GEE236 pKa = 4.72LLILATGHH244 pKa = 5.67QPQTAFADD252 pKa = 3.6YY253 pKa = 10.14RR254 pKa = 11.84LRR256 pKa = 11.84WGIEE260 pKa = 3.82TLFATLKK267 pKa = 9.6TRR269 pKa = 11.84GFNLEE274 pKa = 4.08STHH277 pKa = 5.89FCHH280 pKa = 7.72AEE282 pKa = 3.88RR283 pKa = 11.84LSKK286 pKa = 10.85LIALLALAFCWAMLTGLWQHH306 pKa = 5.51QQHH309 pKa = 7.42PIPLKK314 pKa = 9.02AHH316 pKa = 5.36GRR318 pKa = 11.84RR319 pKa = 11.84AKK321 pKa = 10.36SLFRR325 pKa = 11.84YY326 pKa = 9.9GCDD329 pKa = 3.22FLRR332 pKa = 11.84RR333 pKa = 11.84TFSDD337 pKa = 4.52FSLRR341 pKa = 11.84RR342 pKa = 11.84SEE344 pKa = 4.73FNQALKK350 pKa = 10.85LLSLYY355 pKa = 10.79

Molecular weight: 41.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6060

0

6060

1735983

28

10778

286.5

31.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.311 ± 0.041

0.945 ± 0.012

5.768 ± 0.04

6.014 ± 0.036

3.869 ± 0.023

7.49 ± 0.046

2.021 ± 0.02

5.563 ± 0.028

3.134 ± 0.032

10.717 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.211 ± 0.018

3.199 ± 0.031

5.179 ± 0.035

4.912 ± 0.03

5.806 ± 0.037

5.611 ± 0.027

5.886 ± 0.038

7.086 ± 0.024

1.502 ± 0.014

2.772 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski