Amino acid dipepetide frequency for Fusarium poae alternavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.301AlaAla: 10.301 ± 2.044
0.763AlaCys: 0.763 ± 0.513
7.249AlaAsp: 7.249 ± 1.182
7.631AlaGlu: 7.631 ± 1.407
3.815AlaPhe: 3.815 ± 0.941
6.486AlaGly: 6.486 ± 1.025
1.526AlaHis: 1.526 ± 0.889
3.434AlaIle: 3.434 ± 0.384
3.815AlaLys: 3.815 ± 0.941
7.631AlaLeu: 7.631 ± 1.121
1.145AlaMet: 1.145 ± 0.128
3.815AlaAsn: 3.815 ± 0.128
4.96AlaPro: 4.96 ± 1.264
3.815AlaGln: 3.815 ± 0.941
7.631AlaArg: 7.631 ± 1.259
7.631AlaSer: 7.631 ± 2.22
3.434AlaThr: 3.434 ± 0.27
7.631AlaVal: 7.631 ± 1.106
1.908AlaTrp: 1.908 ± 0.672
5.723AlaTyr: 5.723 ± 0.352
0.0AlaXaa: 0.0 ± 0.0
Cys
0.763CysAla: 0.763 ± 0.513
0.382CysCys: 0.382 ± 0.332
0.763CysAsp: 0.763 ± 0.384
0.382CysGlu: 0.382 ± 0.332
0.382CysPhe: 0.382 ± 0.256
0.763CysGly: 0.763 ± 0.513
0.0CysHis: 0.0 ± 0.0
0.763CysIle: 0.763 ± 0.513
1.145CysLys: 1.145 ± 0.769
0.763CysLeu: 0.763 ± 0.513
0.0CysMet: 0.0 ± 0.0
0.382CysAsn: 0.382 ± 0.337
0.382CysPro: 0.382 ± 0.337
0.0CysGln: 0.0 ± 0.0
0.382CysArg: 0.382 ± 0.332
0.763CysSer: 0.763 ± 0.513
0.382CysThr: 0.382 ± 0.256
1.145CysVal: 1.145 ± 0.421
0.763CysTrp: 0.763 ± 0.283
0.763CysTyr: 0.763 ± 0.279
0.0CysXaa: 0.0 ± 0.0
Asp
5.723AspAla: 5.723 ± 0.64
0.0AspCys: 0.0 ± 0.0
4.197AspAsp: 4.197 ± 0.409
3.052AspGlu: 3.052 ± 1.626
3.052AspPhe: 3.052 ± 1.376
8.012AspGly: 8.012 ± 0.896
1.526AspHis: 1.526 ± 0.558
3.434AspIle: 3.434 ± 1.175
5.341AspLys: 5.341 ± 2.102
4.96AspLeu: 4.96 ± 1.288
1.908AspMet: 1.908 ± 0.877
3.434AspAsn: 3.434 ± 0.681
4.197AspPro: 4.197 ± 2.136
0.763AspGln: 0.763 ± 0.279
3.052AspArg: 3.052 ± 0.64
1.908AspSer: 1.908 ± 0.288
3.052AspThr: 3.052 ± 0.831
7.631AspVal: 7.631 ± 0.315
1.145AspTrp: 1.145 ± 0.769
1.145AspTyr: 1.145 ± 0.421
0.0AspXaa: 0.0 ± 0.0
Glu
5.341GluAla: 5.341 ± 0.915
0.382GluCys: 0.382 ± 0.337
3.052GluAsp: 3.052 ± 0.853
2.289GluGlu: 2.289 ± 0.595
2.671GluPhe: 2.671 ± 1.375
2.671GluGly: 2.671 ± 0.518
1.145GluHis: 1.145 ± 0.421
1.908GluIle: 1.908 ± 0.385
3.052GluLys: 3.052 ± 0.257
8.394GluLeu: 8.394 ± 0.818
1.145GluMet: 1.145 ± 0.128
2.289GluAsn: 2.289 ± 1.134
4.578GluPro: 4.578 ± 1.522
0.763GluGln: 0.763 ± 0.513
5.341GluArg: 5.341 ± 0.899
3.815GluSer: 3.815 ± 0.576
1.145GluThr: 1.145 ± 0.421
2.671GluVal: 2.671 ± 0.931
0.382GluTrp: 0.382 ± 0.256
2.289GluTyr: 2.289 ± 0.642
0.0GluXaa: 0.0 ± 0.0
Phe
2.289PheAla: 2.289 ± 0.849
1.526PheCys: 1.526 ± 0.129
4.197PheAsp: 4.197 ± 0.644
1.145PheGlu: 1.145 ± 0.557
3.434PhePhe: 3.434 ± 0.656
5.341PheGly: 5.341 ± 2.374
0.0PheHis: 0.0 ± 0.0
0.763PheIle: 0.763 ± 0.279
1.526PheLys: 1.526 ± 0.639
4.96PheLeu: 4.96 ± 0.348
0.763PheMet: 0.763 ± 0.272
0.763PheAsn: 0.763 ± 0.283
2.289PhePro: 2.289 ± 0.842
0.763PheGln: 0.763 ± 0.384
3.052PheArg: 3.052 ± 0.344
3.052PheSer: 3.052 ± 0.64
1.908PheThr: 1.908 ± 0.672
3.815PheVal: 3.815 ± 0.128
0.763PheTrp: 0.763 ± 0.513
1.145PheTyr: 1.145 ± 0.128
0.0PheXaa: 0.0 ± 0.0
Gly
6.105GlyAla: 6.105 ± 0.689
1.526GlyCys: 1.526 ± 0.416
6.105GlyAsp: 6.105 ± 0.885
3.052GlyGlu: 3.052 ± 0.257
3.815GlyPhe: 3.815 ± 0.547
7.249GlyGly: 7.249 ± 1.871
2.289GlyHis: 2.289 ± 0.33
3.434GlyIle: 3.434 ± 1.358
1.908GlyLys: 1.908 ± 0.274
7.631GlyLeu: 7.631 ± 0.63
1.145GlyMet: 1.145 ± 0.422
1.908GlyAsn: 1.908 ± 1.003
2.289GlyPro: 2.289 ± 0.642
4.197GlyGln: 4.197 ± 0.768
6.868GlyArg: 6.868 ± 0.649
6.105GlySer: 6.105 ± 1.349
5.723GlyThr: 5.723 ± 0.825
5.723GlyVal: 5.723 ± 0.316
1.908GlyTrp: 1.908 ± 0.385
2.671GlyTyr: 2.671 ± 0.01
0.0GlyXaa: 0.0 ± 0.0
His
2.671HisAla: 2.671 ± 0.523
0.0HisCys: 0.0 ± 0.0
0.763HisAsp: 0.763 ± 0.279
0.0HisGlu: 0.0 ± 0.0
2.671HisPhe: 2.671 ± 0.557
0.763HisGly: 0.763 ± 0.664
0.763HisHis: 0.763 ± 0.279
0.763HisIle: 0.763 ± 0.283
0.382HisLys: 0.382 ± 0.256
3.052HisLeu: 3.052 ± 0.853
0.382HisMet: 0.382 ± 0.215
0.763HisAsn: 0.763 ± 0.283
1.526HisPro: 1.526 ± 0.558
0.763HisGln: 0.763 ± 0.283
1.145HisArg: 1.145 ± 0.557
2.289HisSer: 2.289 ± 0.837
0.382HisThr: 0.382 ± 0.332
1.526HisVal: 1.526 ± 0.769
0.0HisTrp: 0.0 ± 0.0
1.145HisTyr: 1.145 ± 0.421
0.0HisXaa: 0.0 ± 0.0
Ile
5.341IleAla: 5.341 ± 0.019
0.763IleCys: 0.763 ± 0.513
4.197IleAsp: 4.197 ± 0.768
1.526IleGlu: 1.526 ± 0.566
0.0IlePhe: 0.0 ± 0.0
2.289IleGly: 2.289 ± 0.33
1.145IleHis: 1.145 ± 0.421
0.763IleIle: 0.763 ± 0.674
0.763IleLys: 0.763 ± 0.513
2.671IleLeu: 2.671 ± 0.898
0.382IleMet: 0.382 ± 0.256
1.145IleAsn: 1.145 ± 0.642
1.526IlePro: 1.526 ± 0.639
1.145IleGln: 1.145 ± 0.128
3.052IleArg: 3.052 ± 2.221
1.145IleSer: 1.145 ± 0.567
1.526IleThr: 1.526 ± 0.566
3.052IleVal: 3.052 ± 0.759
0.0IleTrp: 0.0 ± 0.0
0.763IleTyr: 0.763 ± 0.664
0.0IleXaa: 0.0 ± 0.0
Lys
2.289LysAla: 2.289 ± 1.124
0.382LysCys: 0.382 ± 0.256
2.289LysAsp: 2.289 ± 0.845
1.908LysGlu: 1.908 ± 0.878
2.671LysPhe: 2.671 ± 1.375
2.671LysGly: 2.671 ± 0.523
1.145LysHis: 1.145 ± 0.769
1.145LysIle: 1.145 ± 0.421
0.763LysLys: 0.763 ± 0.279
5.341LysLeu: 5.341 ± 1.047
0.382LysMet: 0.382 ± 0.256
1.145LysAsn: 1.145 ± 0.557
1.526LysPro: 1.526 ± 0.129
0.763LysGln: 0.763 ± 0.513
4.578LysArg: 4.578 ± 0.386
1.908LysSer: 1.908 ± 0.672
1.526LysThr: 1.526 ± 0.558
2.289LysVal: 2.289 ± 0.842
1.145LysTrp: 1.145 ± 0.421
1.145LysTyr: 1.145 ± 0.421
0.0LysXaa: 0.0 ± 0.0
Leu
11.446LeuAla: 11.446 ± 1.201
1.908LeuCys: 1.908 ± 0.878
6.868LeuAsp: 6.868 ± 1.448
7.249LeuGlu: 7.249 ± 1.343
3.815LeuPhe: 3.815 ± 0.429
8.394LeuGly: 8.394 ± 0.63
1.908LeuHis: 1.908 ± 0.741
2.289LeuIle: 2.289 ± 0.614
1.526LeuLys: 1.526 ± 0.639
6.486LeuLeu: 6.486 ± 0.41
0.382LeuMet: 0.382 ± 0.337
2.671LeuAsn: 2.671 ± 0.523
6.868LeuPro: 6.868 ± 2.366
1.908LeuGln: 1.908 ± 0.288
6.105LeuArg: 6.105 ± 1.663
4.96LeuSer: 4.96 ± 0.828
3.815LeuThr: 3.815 ± 0.941
6.868LeuVal: 6.868 ± 0.438
1.145LeuTrp: 1.145 ± 0.557
3.815LeuTyr: 3.815 ± 0.941
0.0LeuXaa: 0.0 ± 0.0
Met
1.526MetAla: 1.526 ± 0.129
0.0MetCys: 0.0 ± 0.0
1.145MetAsp: 1.145 ± 0.422
0.382MetGlu: 0.382 ± 0.337
1.908MetPhe: 1.908 ± 0.274
0.382MetGly: 0.382 ± 0.332
0.0MetHis: 0.0 ± 0.0
0.763MetIle: 0.763 ± 0.279
0.763MetLys: 0.763 ± 0.513
1.145MetLeu: 1.145 ± 0.769
0.382MetMet: 0.382 ± 0.332
0.763MetAsn: 0.763 ± 0.384
1.145MetPro: 1.145 ± 0.567
0.763MetGln: 0.763 ± 0.674
2.671MetArg: 2.671 ± 0.523
1.908MetSer: 1.908 ± 0.274
0.763MetThr: 0.763 ± 0.279
1.145MetVal: 1.145 ± 0.128
0.763MetTrp: 0.763 ± 0.513
0.382MetTyr: 0.382 ± 0.256
0.0MetXaa: 0.0 ± 0.0
Asn
2.671AsnAla: 2.671 ± 0.947
0.0AsnCys: 0.0 ± 0.0
2.289AsnAsp: 2.289 ± 0.761
1.526AsnGlu: 1.526 ± 0.427
0.763AsnPhe: 0.763 ± 0.674
1.908AsnGly: 1.908 ± 0.385
0.763AsnHis: 0.763 ± 0.283
0.763AsnIle: 0.763 ± 0.674
1.145AsnLys: 1.145 ± 0.421
3.815AsnLeu: 3.815 ± 1.025
0.382AsnMet: 0.382 ± 0.256
3.434AsnAsn: 3.434 ± 1.402
1.526AsnPro: 1.526 ± 0.427
0.382AsnGln: 0.382 ± 0.256
4.197AsnArg: 4.197 ± 1.088
1.908AsnSer: 1.908 ± 0.385
2.289AsnThr: 2.289 ± 0.34
3.052AsnVal: 3.052 ± 1.64
1.145AsnTrp: 1.145 ± 0.128
0.763AsnTyr: 0.763 ± 0.283
0.0AsnXaa: 0.0 ± 0.0
Pro
5.723ProAla: 5.723 ± 2.785
0.763ProCys: 0.763 ± 0.384
4.197ProAsp: 4.197 ± 1.85
3.052ProGlu: 3.052 ± 0.755
2.671ProPhe: 2.671 ± 1.587
6.486ProGly: 6.486 ± 0.585
0.763ProHis: 0.763 ± 0.384
1.526ProIle: 1.526 ± 0.951
1.145ProLys: 1.145 ± 0.567
4.197ProLeu: 4.197 ± 0.768
0.763ProMet: 0.763 ± 0.384
0.763ProAsn: 0.763 ± 0.279
4.96ProPro: 4.96 ± 0.622
0.0ProGln: 0.0 ± 0.0
3.434ProArg: 3.434 ± 0.293
3.052ProSer: 3.052 ± 0.64
2.671ProThr: 2.671 ± 1.085
4.578ProVal: 4.578 ± 0.512
0.763ProTrp: 0.763 ± 0.513
1.145ProTyr: 1.145 ± 0.128
0.0ProXaa: 0.0 ± 0.0
Gln
2.289GlnAla: 2.289 ± 1.124
0.0GlnCys: 0.0 ± 0.0
0.763GlnAsp: 0.763 ± 0.283
0.763GlnGlu: 0.763 ± 0.279
0.763GlnPhe: 0.763 ± 0.664
1.908GlnGly: 1.908 ± 0.288
1.145GlnHis: 1.145 ± 0.567
0.763GlnIle: 0.763 ± 0.674
0.382GlnLys: 0.382 ± 0.256
1.526GlnLeu: 1.526 ± 0.416
0.0GlnMet: 0.0 ± 0.0
0.382GlnAsn: 0.382 ± 0.337
1.908GlnPro: 1.908 ± 1.274
1.526GlnGln: 1.526 ± 0.566
2.671GlnArg: 2.671 ± 1.401
0.763GlnSer: 0.763 ± 0.513
1.526GlnThr: 1.526 ± 0.639
2.671GlnVal: 2.671 ± 0.898
0.763GlnTrp: 0.763 ± 0.279
0.382GlnTyr: 0.382 ± 0.256
0.0GlnXaa: 0.0 ± 0.0
Arg
12.591ArgAla: 12.591 ± 1.122
1.145ArgCys: 1.145 ± 0.769
3.815ArgAsp: 3.815 ± 1.755
4.96ArgGlu: 4.96 ± 0.256
3.052ArgPhe: 3.052 ± 0.831
8.394ArgGly: 8.394 ± 0.581
2.289ArgHis: 2.289 ± 0.595
2.671ArgIle: 2.671 ± 1.104
1.908ArgLys: 1.908 ± 0.512
4.578ArgLeu: 4.578 ± 0.512
2.289ArgMet: 2.289 ± 0.842
3.052ArgAsn: 3.052 ± 0.831
2.671ArgPro: 2.671 ± 1.06
1.908ArgGln: 1.908 ± 0.995
6.105ArgArg: 6.105 ± 0.261
6.105ArgSer: 6.105 ± 1.661
4.578ArgThr: 4.578 ± 1.227
8.012ArgVal: 8.012 ± 1.401
0.382ArgTrp: 0.382 ± 0.337
2.671ArgTyr: 2.671 ± 0.532
0.0ArgXaa: 0.0 ± 0.0
Ser
7.249SerAla: 7.249 ± 2.277
0.763SerCys: 0.763 ± 0.513
4.197SerAsp: 4.197 ± 0.93
4.96SerGlu: 4.96 ± 0.256
1.145SerPhe: 1.145 ± 0.128
2.671SerGly: 2.671 ± 0.898
0.763SerHis: 0.763 ± 0.279
3.434SerIle: 3.434 ± 0.756
3.052SerLys: 3.052 ± 1.155
6.105SerLeu: 6.105 ± 0.647
1.908SerMet: 1.908 ± 0.274
1.526SerAsn: 1.526 ± 0.639
1.145SerPro: 1.145 ± 0.557
0.763SerGln: 0.763 ± 0.279
7.249SerArg: 7.249 ± 1.89
3.815SerSer: 3.815 ± 1.755
1.145SerThr: 1.145 ± 0.557
6.105SerVal: 6.105 ± 2.236
1.526SerTrp: 1.526 ± 1.026
1.908SerTyr: 1.908 ± 0.288
0.0SerXaa: 0.0 ± 0.0
Thr
4.197ThrAla: 4.197 ± 0.549
0.382ThrCys: 0.382 ± 0.256
1.526ThrAsp: 1.526 ± 0.639
1.526ThrGlu: 1.526 ± 0.639
3.052ThrPhe: 3.052 ± 1.351
3.434ThrGly: 3.434 ± 0.656
1.145ThrHis: 1.145 ± 0.128
1.145ThrIle: 1.145 ± 0.769
2.671ThrLys: 2.671 ± 0.931
4.96ThrLeu: 4.96 ± 0.747
1.526ThrMet: 1.526 ± 0.873
1.908ThrAsn: 1.908 ± 0.288
1.908ThrPro: 1.908 ± 0.288
0.763ThrGln: 0.763 ± 0.513
4.197ThrArg: 4.197 ± 0.644
1.908ThrSer: 1.908 ± 0.288
4.578ThrThr: 4.578 ± 0.297
3.815ThrVal: 3.815 ± 0.415
1.526ThrTrp: 1.526 ± 0.951
1.145ThrTyr: 1.145 ± 0.422
0.0ThrXaa: 0.0 ± 0.0
Val
6.868ValAla: 6.868 ± 1.028
0.382ValCys: 0.382 ± 0.256
5.341ValAsp: 5.341 ± 1.417
4.96ValGlu: 4.96 ± 1.153
2.289ValPhe: 2.289 ± 0.34
6.486ValGly: 6.486 ± 0.625
1.908ValHis: 1.908 ± 0.274
2.671ValIle: 2.671 ± 0.523
3.815ValLys: 3.815 ± 1.468
8.012ValLeu: 8.012 ± 1.408
1.526ValMet: 1.526 ± 0.241
4.578ValAsn: 4.578 ± 0.764
4.578ValPro: 4.578 ± 1.227
0.382ValGln: 0.382 ± 0.332
6.105ValArg: 6.105 ± 0.261
5.341ValSer: 5.341 ± 1.896
4.197ValThr: 4.197 ± 0.432
5.341ValVal: 5.341 ± 1.075
2.671ValTrp: 2.671 ± 0.523
4.578ValTyr: 4.578 ± 1.386
0.0ValXaa: 0.0 ± 0.0
Trp
1.526TrpAla: 1.526 ± 1.026
0.0TrpCys: 0.0 ± 0.0
1.908TrpAsp: 1.908 ± 0.385
2.289TrpGlu: 2.289 ± 0.256
0.382TrpPhe: 0.382 ± 0.256
1.526TrpGly: 1.526 ± 0.639
0.0TrpHis: 0.0 ± 0.0
0.382TrpIle: 0.382 ± 0.256
0.382TrpLys: 0.382 ± 0.337
1.526TrpLeu: 1.526 ± 0.129
0.763TrpMet: 0.763 ± 0.283
0.0TrpAsn: 0.0 ± 0.0
0.382TrpPro: 0.382 ± 0.337
1.145TrpGln: 1.145 ± 0.769
2.289TrpArg: 2.289 ± 0.34
0.763TrpSer: 0.763 ± 0.513
0.763TrpThr: 0.763 ± 0.279
2.289TrpVal: 2.289 ± 0.642
0.382TrpTrp: 0.382 ± 0.337
0.763TrpTyr: 0.763 ± 0.279
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.434TyrAla: 3.434 ± 0.293
0.0TyrCys: 0.0 ± 0.0
2.671TyrAsp: 2.671 ± 1.085
2.671TyrGlu: 2.671 ± 0.518
1.145TyrPhe: 1.145 ± 0.422
3.815TyrGly: 3.815 ± 0.872
1.526TyrHis: 1.526 ± 0.416
0.382TyrIle: 0.382 ± 0.256
1.526TyrLys: 1.526 ± 1.026
2.671TyrLeu: 2.671 ± 0.529
1.145TyrMet: 1.145 ± 0.567
0.0TyrAsn: 0.0 ± 0.0
2.289TyrPro: 2.289 ± 0.34
0.382TyrGln: 0.382 ± 0.337
3.052TyrArg: 3.052 ± 1.086
2.289TyrSer: 2.289 ± 0.256
1.908TyrThr: 1.908 ± 0.672
3.052TyrVal: 3.052 ± 0.831
0.382TyrTrp: 0.382 ± 0.256
1.526TyrTyr: 1.526 ± 0.427
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (2622 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski