Torque teno mini virus 3

Taxonomy: Viruses; Anelloviridae; Betatorquevirus

Average proteome isoelectric point is 7.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9JG51|Q9JG51_9VIRU Uncharacterized protein OS=Torque teno mini virus 3 OX=687371 PE=4 SV=1
MM1 pKa = 7.58SFTFWKK7 pKa = 6.22PTPYY11 pKa = 10.57GHH13 pKa = 6.61RR14 pKa = 11.84QKK16 pKa = 11.07EE17 pKa = 4.28NNWINEE23 pKa = 4.08IIHH26 pKa = 5.92FHH28 pKa = 7.64DD29 pKa = 4.15NFCGCDD35 pKa = 3.48EE36 pKa = 5.24PIKK39 pKa = 10.69HH40 pKa = 6.74LIWKK44 pKa = 8.47LAHH47 pKa = 6.61NAPQLNIEE55 pKa = 4.5KK56 pKa = 10.39EE57 pKa = 4.13DD58 pKa = 3.6LQKK61 pKa = 10.87LQKK64 pKa = 10.3CLPTTTTDD72 pKa = 2.88GTTGEE77 pKa = 4.49DD78 pKa = 3.35QHH80 pKa = 7.28TDD82 pKa = 3.33AADD85 pKa = 3.72GDD87 pKa = 4.27ADD89 pKa = 4.8NIDD92 pKa = 4.0EE93 pKa = 4.88GDD95 pKa = 3.68LDD97 pKa = 4.22RR98 pKa = 11.84LFEE101 pKa = 4.61EE102 pKa = 5.7DD103 pKa = 4.91FGDD106 pKa = 3.85DD107 pKa = 3.24TRR109 pKa = 5.7

Molecular weight: 12.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9JG50|Q9JG50_9VIRU Capsid protein OS=Torque teno mini virus 3 OX=687371 PE=3 SV=1
MM1 pKa = 8.09LFMTFFLSGEE11 pKa = 4.24DD12 pKa = 4.95AQHH15 pKa = 4.96QWKK18 pKa = 10.19KK19 pKa = 10.81SKK21 pKa = 9.84TPVTSHH27 pKa = 6.69TFPSPLKK34 pKa = 10.03SLKK37 pKa = 9.97DD38 pKa = 3.49VKK40 pKa = 11.04SRR42 pKa = 11.84IQTQTNQNTYY52 pKa = 8.5TASTKK57 pKa = 10.45DD58 pKa = 3.44DD59 pKa = 3.69KK60 pKa = 11.23FLQKK64 pKa = 10.48LLKK67 pKa = 9.97KK68 pKa = 10.39EE69 pKa = 4.02YY70 pKa = 11.03VKK72 pKa = 10.13TLNLKK77 pKa = 9.37HH78 pKa = 6.5LCSQMDD84 pKa = 3.56QNSTSQYY91 pKa = 9.0SNKK94 pKa = 9.4KK95 pKa = 8.53KK96 pKa = 9.04KK97 pKa = 9.53HH98 pKa = 4.95RR99 pKa = 11.84RR100 pKa = 11.84HH101 pKa = 6.28RR102 pKa = 11.84ARR104 pKa = 11.84KK105 pKa = 7.7KK106 pKa = 9.71QKK108 pKa = 8.58HH109 pKa = 5.61HH110 pKa = 6.16YY111 pKa = 8.77SRR113 pKa = 11.84SSSSSSDD120 pKa = 3.03TRR122 pKa = 11.84EE123 pKa = 3.93SSSEE127 pKa = 4.1SSSDD131 pKa = 3.14

Molecular weight: 15.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

901

109

661

300.3

35.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.553 ± 0.527

1.887 ± 0.381

5.216 ± 2.358

4.661 ± 0.925

4.44 ± 0.29

4.44 ± 1.222

3.441 ± 1.049

5.771 ± 1.749

9.101 ± 2.055

7.547 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.443 ± 0.283

6.992 ± 1.219

5.882 ± 1.476

6.215 ± 0.531

6.104 ± 1.057

6.437 ± 3.955

7.436 ± 0.922

2.442 ± 0.692

2.664 ± 0.678

5.327 ± 1.708
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski