Pandoravirus dulcis

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses; Pandoravirus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1070 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4VTA8|S4VTA8_9VIRU Fascin-like protein OS=Pandoravirus dulcis OX=1349409 GN=pdul_cds_543 PE=4 SV=1
MM1 pKa = 7.02ATCSGSPQDD10 pKa = 5.88DD11 pKa = 3.9EE12 pKa = 4.94CCPITLVPFRR22 pKa = 11.84TITAARR28 pKa = 11.84TTFLPCCHH36 pKa = 6.87RR37 pKa = 11.84FDD39 pKa = 4.22SDD41 pKa = 4.8AIRR44 pKa = 11.84HH45 pKa = 5.69YY46 pKa = 10.81IDD48 pKa = 3.23NCLARR53 pKa = 11.84RR54 pKa = 11.84APRR57 pKa = 11.84GAAPPVPCPVCRR69 pKa = 11.84CRR71 pKa = 11.84VPPDD75 pKa = 3.46YY76 pKa = 10.66LADD79 pKa = 3.51MGVPVAWPPSAPVVAPVAAPAVPAAPAVPAAPAASAAIAVAAPATTARR127 pKa = 11.84RR128 pKa = 11.84SSRR131 pKa = 11.84PSRR134 pKa = 11.84PPAPVVIVISDD145 pKa = 4.03DD146 pKa = 4.37DD147 pKa = 4.73DD148 pKa = 6.09DD149 pKa = 5.27SEE151 pKa = 4.5EE152 pKa = 4.07VHH154 pKa = 6.51EE155 pKa = 5.83RR156 pKa = 11.84TAQWINSDD164 pKa = 4.8DD165 pKa = 5.32DD166 pKa = 5.72DD167 pKa = 7.53DD168 pKa = 7.46GDD170 pKa = 6.17DD171 pKa = 6.01DD172 pKa = 7.01DD173 pKa = 7.52DD174 pKa = 6.31DD175 pKa = 6.45DD176 pKa = 4.38STGSLDD182 pKa = 3.92EE183 pKa = 5.41FIVDD187 pKa = 5.3DD188 pKa = 6.21DD189 pKa = 4.2EE190 pKa = 4.64TDD192 pKa = 3.39PDD194 pKa = 4.2AEE196 pKa = 4.29YY197 pKa = 10.38TPAPVVAAPDD207 pKa = 4.41DD208 pKa = 5.4DD209 pKa = 6.0DD210 pKa = 7.58DD211 pKa = 7.08SDD213 pKa = 6.5LDD215 pKa = 5.58DD216 pKa = 6.79DD217 pKa = 6.31DD218 pKa = 7.05DD219 pKa = 6.44DD220 pKa = 4.89STDD223 pKa = 3.76SDD225 pKa = 4.8CSCLTDD231 pKa = 4.66SEE233 pKa = 5.35DD234 pKa = 3.16II235 pKa = 4.24

Molecular weight: 24.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4VSA2|S4VSA2_9VIRU Uncharacterized protein OS=Pandoravirus dulcis OX=1349409 GN=pdul_cds_935 PE=4 SV=1
MM1 pKa = 7.97GDD3 pKa = 3.41RR4 pKa = 11.84PDD6 pKa = 4.5RR7 pKa = 11.84GSKK10 pKa = 8.38CTRR13 pKa = 11.84APAFVVGSCVCTEE26 pKa = 4.14RR27 pKa = 11.84EE28 pKa = 4.26VRR30 pKa = 11.84WSFFLLVVILTLVTISLVLFVSAVRR55 pKa = 11.84YY56 pKa = 7.57VKK58 pKa = 10.34SWVSEE63 pKa = 4.08KK64 pKa = 10.33QRR66 pKa = 11.84LRR68 pKa = 11.84ADD70 pKa = 3.43VKK72 pKa = 10.86ALSRR76 pKa = 11.84QASGVMRR83 pKa = 11.84DD84 pKa = 3.48AQQRR88 pKa = 11.84AAAAASAPSHH98 pKa = 6.56VPDD101 pKa = 4.13ATATAPPARR110 pKa = 11.84APPSAAEE117 pKa = 3.8SAAASKK123 pKa = 10.96ARR125 pKa = 11.84TAAVAAADD133 pKa = 3.98PLVHH137 pKa = 6.59EE138 pKa = 4.82MLDD141 pKa = 3.61AIEE144 pKa = 4.02AVRR147 pKa = 11.84LGSCGRR153 pKa = 11.84GFAFAVDD160 pKa = 3.53SRR162 pKa = 11.84GGVWAHH168 pKa = 5.67GKK170 pKa = 7.39TRR172 pKa = 11.84HH173 pKa = 5.65LARR176 pKa = 11.84GATGRR181 pKa = 11.84VPGFHH186 pKa = 6.56RR187 pKa = 11.84VADD190 pKa = 4.1ADD192 pKa = 3.8HH193 pKa = 6.93TGGSTSGAYY202 pKa = 10.22DD203 pKa = 3.89CDD205 pKa = 4.41DD206 pKa = 3.89DD207 pKa = 5.93HH208 pKa = 7.06EE209 pKa = 7.06ADD211 pKa = 3.26ASVYY215 pKa = 10.54GGAPVARR222 pKa = 11.84GRR224 pKa = 11.84RR225 pKa = 11.84RR226 pKa = 11.84RR227 pKa = 11.84GGAPARR233 pKa = 11.84APSPLADD240 pKa = 3.4MLGAARR246 pKa = 11.84RR247 pKa = 11.84GGGYY251 pKa = 7.49VHH253 pKa = 6.79FRR255 pKa = 11.84WKK257 pKa = 10.73RR258 pKa = 11.84EE259 pKa = 4.0VLMMAYY265 pKa = 8.59VHH267 pKa = 6.15PVKK270 pKa = 10.37GTDD273 pKa = 3.4LVLGGAVPVPRR284 pKa = 11.84KK285 pKa = 9.16QKK287 pKa = 10.36AWEE290 pKa = 3.96EE291 pKa = 4.05ANAARR296 pKa = 11.84PAAPARR302 pKa = 11.84RR303 pKa = 3.79

Molecular weight: 31.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1070

0

1070

424486

60

2245

396.7

42.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.358 ± 0.097

2.433 ± 0.044

7.623 ± 0.079

3.921 ± 0.049

2.213 ± 0.033

8.227 ± 0.071

2.788 ± 0.046

2.809 ± 0.031

1.879 ± 0.048

7.964 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.911 ± 0.026

1.84 ± 0.031

6.873 ± 0.081

2.469 ± 0.039

9.165 ± 0.069

5.629 ± 0.062

5.51 ± 0.056

7.519 ± 0.064

1.863 ± 0.036

2.005 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski