Amino acid dipepetide frequency for Ryegrass mosaic virus (isolate Denmark/Danish) (RGMV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.131AlaAla: 7.131 ± 0.0
0.648AlaCys: 0.648 ± 0.0
3.241AlaAsp: 3.241 ± 0.0
5.186AlaGlu: 5.186 ± 0.0
2.917AlaPhe: 2.917 ± 0.0
3.566AlaGly: 3.566 ± 0.0
1.621AlaHis: 1.621 ± 0.0
4.862AlaIle: 4.862 ± 0.0
2.917AlaLys: 2.917 ± 0.0
7.131AlaLeu: 7.131 ± 0.0
2.593AlaMet: 2.593 ± 0.0
4.862AlaAsn: 4.862 ± 0.0
4.862AlaPro: 4.862 ± 0.0
4.538AlaGln: 4.538 ± 0.0
6.159AlaArg: 6.159 ± 0.0
4.538AlaSer: 4.538 ± 0.0
5.835AlaThr: 5.835 ± 0.0
2.917AlaVal: 2.917 ± 0.0
0.648AlaTrp: 0.648 ± 0.0
2.917AlaTyr: 2.917 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.972CysAla: 0.972 ± 0.0
0.648CysCys: 0.648 ± 0.0
1.297CysAsp: 1.297 ± 0.0
0.972CysGlu: 0.972 ± 0.0
0.648CysPhe: 0.648 ± 0.0
1.621CysGly: 1.621 ± 0.0
0.324CysHis: 0.324 ± 0.0
1.297CysIle: 1.297 ± 0.0
0.324CysLys: 0.324 ± 0.0
1.297CysLeu: 1.297 ± 0.0
0.324CysMet: 0.324 ± 0.0
0.972CysAsn: 0.972 ± 0.0
0.324CysPro: 0.324 ± 0.0
0.324CysGln: 0.324 ± 0.0
0.648CysArg: 0.648 ± 0.0
0.324CysSer: 0.324 ± 0.0
0.972CysThr: 0.972 ± 0.0
0.648CysVal: 0.648 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.648CysTyr: 0.648 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.566AspAla: 3.566 ± 0.0
0.324AspCys: 0.324 ± 0.0
3.241AspAsp: 3.241 ± 0.0
4.214AspGlu: 4.214 ± 0.0
3.566AspPhe: 3.566 ± 0.0
4.538AspGly: 4.538 ± 0.0
0.972AspHis: 0.972 ± 0.0
3.566AspIle: 3.566 ± 0.0
2.593AspLys: 2.593 ± 0.0
7.131AspLeu: 7.131 ± 0.0
2.269AspMet: 2.269 ± 0.0
1.297AspAsn: 1.297 ± 0.0
1.621AspPro: 1.621 ± 0.0
1.945AspGln: 1.945 ± 0.0
1.621AspArg: 1.621 ± 0.0
4.538AspSer: 4.538 ± 0.0
4.538AspThr: 4.538 ± 0.0
3.241AspVal: 3.241 ± 0.0
0.0AspTrp: 0.0 ± 0.0
2.917AspTyr: 2.917 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.89GluAla: 3.89 ± 0.0
0.648GluCys: 0.648 ± 0.0
2.917GluAsp: 2.917 ± 0.0
2.593GluGlu: 2.593 ± 0.0
3.241GluPhe: 3.241 ± 0.0
2.269GluGly: 2.269 ± 0.0
0.972GluHis: 0.972 ± 0.0
4.862GluIle: 4.862 ± 0.0
4.214GluLys: 4.214 ± 0.0
5.186GluLeu: 5.186 ± 0.0
2.593GluMet: 2.593 ± 0.0
4.862GluAsn: 4.862 ± 0.0
3.241GluPro: 3.241 ± 0.0
2.269GluGln: 2.269 ± 0.0
4.538GluArg: 4.538 ± 0.0
2.593GluSer: 2.593 ± 0.0
1.945GluThr: 1.945 ± 0.0
2.917GluVal: 2.917 ± 0.0
0.324GluTrp: 0.324 ± 0.0
2.269GluTyr: 2.269 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.241PheAla: 3.241 ± 0.0
0.324PheCys: 0.324 ± 0.0
3.241PheAsp: 3.241 ± 0.0
4.214PheGlu: 4.214 ± 0.0
1.297PhePhe: 1.297 ± 0.0
3.566PheGly: 3.566 ± 0.0
0.0PheHis: 0.0 ± 0.0
0.972PheIle: 0.972 ± 0.0
2.269PheLys: 2.269 ± 0.0
1.297PheLeu: 1.297 ± 0.0
1.621PheMet: 1.621 ± 0.0
0.648PheAsn: 0.648 ± 0.0
1.297PhePro: 1.297 ± 0.0
0.972PheGln: 0.972 ± 0.0
1.297PheArg: 1.297 ± 0.0
2.269PheSer: 2.269 ± 0.0
1.621PheThr: 1.621 ± 0.0
2.593PheVal: 2.593 ± 0.0
0.648PheTrp: 0.648 ± 0.0
1.945PheTyr: 1.945 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.89GlyAla: 3.89 ± 0.0
0.324GlyCys: 0.324 ± 0.0
3.241GlyAsp: 3.241 ± 0.0
2.917GlyGlu: 2.917 ± 0.0
1.945GlyPhe: 1.945 ± 0.0
3.241GlyGly: 3.241 ± 0.0
1.621GlyHis: 1.621 ± 0.0
2.917GlyIle: 2.917 ± 0.0
7.455GlyLys: 7.455 ± 0.0
4.538GlyLeu: 4.538 ± 0.0
0.648GlyMet: 0.648 ± 0.0
3.241GlyAsn: 3.241 ± 0.0
1.945GlyPro: 1.945 ± 0.0
1.621GlyGln: 1.621 ± 0.0
5.186GlyArg: 5.186 ± 0.0
3.89GlySer: 3.89 ± 0.0
4.214GlyThr: 4.214 ± 0.0
2.593GlyVal: 2.593 ± 0.0
0.648GlyTrp: 0.648 ± 0.0
2.593GlyTyr: 2.593 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.917HisAla: 2.917 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.972HisAsp: 0.972 ± 0.0
0.972HisGlu: 0.972 ± 0.0
1.621HisPhe: 1.621 ± 0.0
1.297HisGly: 1.297 ± 0.0
1.945HisHis: 1.945 ± 0.0
0.972HisIle: 0.972 ± 0.0
0.324HisLys: 0.324 ± 0.0
2.593HisLeu: 2.593 ± 0.0
0.972HisMet: 0.972 ± 0.0
0.324HisAsn: 0.324 ± 0.0
0.648HisPro: 0.648 ± 0.0
1.621HisGln: 1.621 ± 0.0
0.324HisArg: 0.324 ± 0.0
1.297HisSer: 1.297 ± 0.0
2.917HisThr: 2.917 ± 0.0
2.269HisVal: 2.269 ± 0.0
0.324HisTrp: 0.324 ± 0.0
0.972HisTyr: 0.972 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
6.159IleAla: 6.159 ± 0.0
1.297IleCys: 1.297 ± 0.0
3.241IleAsp: 3.241 ± 0.0
3.89IleGlu: 3.89 ± 0.0
0.972IlePhe: 0.972 ± 0.0
3.241IleGly: 3.241 ± 0.0
0.972IleHis: 0.972 ± 0.0
3.89IleIle: 3.89 ± 0.0
3.566IleLys: 3.566 ± 0.0
5.186IleLeu: 5.186 ± 0.0
2.593IleMet: 2.593 ± 0.0
1.297IleAsn: 1.297 ± 0.0
2.917IlePro: 2.917 ± 0.0
2.593IleGln: 2.593 ± 0.0
3.89IleArg: 3.89 ± 0.0
3.241IleSer: 3.241 ± 0.0
4.214IleThr: 4.214 ± 0.0
2.593IleVal: 2.593 ± 0.0
0.648IleTrp: 0.648 ± 0.0
1.945IleTyr: 1.945 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.214LysAla: 4.214 ± 0.0
1.297LysCys: 1.297 ± 0.0
5.186LysAsp: 5.186 ± 0.0
2.269LysGlu: 2.269 ± 0.0
1.945LysPhe: 1.945 ± 0.0
3.89LysGly: 3.89 ± 0.0
3.566LysHis: 3.566 ± 0.0
2.269LysIle: 2.269 ± 0.0
3.241LysLys: 3.241 ± 0.0
5.835LysLeu: 5.835 ± 0.0
0.648LysMet: 0.648 ± 0.0
0.648LysAsn: 0.648 ± 0.0
2.269LysPro: 2.269 ± 0.0
3.241LysGln: 3.241 ± 0.0
1.621LysArg: 1.621 ± 0.0
4.862LysSer: 4.862 ± 0.0
3.89LysThr: 3.89 ± 0.0
4.862LysVal: 4.862 ± 0.0
1.297LysTrp: 1.297 ± 0.0
2.269LysTyr: 2.269 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.807LeuAla: 6.807 ± 0.0
1.621LeuCys: 1.621 ± 0.0
2.917LeuAsp: 2.917 ± 0.0
6.159LeuGlu: 6.159 ± 0.0
1.621LeuPhe: 1.621 ± 0.0
3.241LeuGly: 3.241 ± 0.0
1.945LeuHis: 1.945 ± 0.0
4.862LeuIle: 4.862 ± 0.0
6.483LeuLys: 6.483 ± 0.0
9.076LeuLeu: 9.076 ± 0.0
1.945LeuMet: 1.945 ± 0.0
4.862LeuAsn: 4.862 ± 0.0
3.241LeuPro: 3.241 ± 0.0
3.241LeuGln: 3.241 ± 0.0
5.186LeuArg: 5.186 ± 0.0
8.428LeuSer: 8.428 ± 0.0
4.214LeuThr: 4.214 ± 0.0
5.186LeuVal: 5.186 ± 0.0
0.324LeuTrp: 0.324 ± 0.0
3.89LeuTyr: 3.89 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.269MetAla: 2.269 ± 0.0
0.648MetCys: 0.648 ± 0.0
2.269MetAsp: 2.269 ± 0.0
0.972MetGlu: 0.972 ± 0.0
1.297MetPhe: 1.297 ± 0.0
1.297MetGly: 1.297 ± 0.0
0.972MetHis: 0.972 ± 0.0
1.297MetIle: 1.297 ± 0.0
2.593MetLys: 2.593 ± 0.0
3.566MetLeu: 3.566 ± 0.0
1.945MetMet: 1.945 ± 0.0
0.972MetAsn: 0.972 ± 0.0
1.297MetPro: 1.297 ± 0.0
2.269MetGln: 2.269 ± 0.0
2.593MetArg: 2.593 ± 0.0
1.297MetSer: 1.297 ± 0.0
1.621MetThr: 1.621 ± 0.0
1.297MetVal: 1.297 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.945MetTyr: 1.945 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.241AsnAla: 3.241 ± 0.0
0.648AsnCys: 0.648 ± 0.0
2.269AsnAsp: 2.269 ± 0.0
1.945AsnGlu: 1.945 ± 0.0
0.972AsnPhe: 0.972 ± 0.0
2.593AsnGly: 2.593 ± 0.0
0.0AsnHis: 0.0 ± 0.0
3.566AsnIle: 3.566 ± 0.0
2.593AsnLys: 2.593 ± 0.0
3.89AsnLeu: 3.89 ± 0.0
0.648AsnMet: 0.648 ± 0.0
2.593AsnAsn: 2.593 ± 0.0
1.297AsnPro: 1.297 ± 0.0
1.945AsnGln: 1.945 ± 0.0
1.297AsnArg: 1.297 ± 0.0
2.269AsnSer: 2.269 ± 0.0
3.241AsnThr: 3.241 ± 0.0
2.593AsnVal: 2.593 ± 0.0
0.972AsnTrp: 0.972 ± 0.0
1.945AsnTyr: 1.945 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.917ProAla: 2.917 ± 0.0
0.0ProCys: 0.0 ± 0.0
2.269ProAsp: 2.269 ± 0.0
1.621ProGlu: 1.621 ± 0.0
2.593ProPhe: 2.593 ± 0.0
1.621ProGly: 1.621 ± 0.0
0.648ProHis: 0.648 ± 0.0
3.566ProIle: 3.566 ± 0.0
1.945ProLys: 1.945 ± 0.0
3.241ProLeu: 3.241 ± 0.0
1.945ProMet: 1.945 ± 0.0
0.972ProAsn: 0.972 ± 0.0
1.945ProPro: 1.945 ± 0.0
1.297ProGln: 1.297 ± 0.0
2.269ProArg: 2.269 ± 0.0
2.917ProSer: 2.917 ± 0.0
4.862ProThr: 4.862 ± 0.0
1.621ProVal: 1.621 ± 0.0
0.972ProTrp: 0.972 ± 0.0
2.917ProTyr: 2.917 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.593GlnAla: 2.593 ± 0.0
0.972GlnCys: 0.972 ± 0.0
0.324GlnAsp: 0.324 ± 0.0
2.917GlnGlu: 2.917 ± 0.0
1.945GlnPhe: 1.945 ± 0.0
1.297GlnGly: 1.297 ± 0.0
1.297GlnHis: 1.297 ± 0.0
2.593GlnIle: 2.593 ± 0.0
1.297GlnLys: 1.297 ± 0.0
3.566GlnLeu: 3.566 ± 0.0
1.621GlnMet: 1.621 ± 0.0
1.297GlnAsn: 1.297 ± 0.0
2.593GlnPro: 2.593 ± 0.0
0.648GlnGln: 0.648 ± 0.0
3.241GlnArg: 3.241 ± 0.0
3.241GlnSer: 3.241 ± 0.0
1.297GlnThr: 1.297 ± 0.0
2.269GlnVal: 2.269 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.945GlnTyr: 1.945 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
5.511ArgAla: 5.511 ± 0.0
0.972ArgCys: 0.972 ± 0.0
4.538ArgAsp: 4.538 ± 0.0
5.835ArgGlu: 5.835 ± 0.0
0.648ArgPhe: 0.648 ± 0.0
5.186ArgGly: 5.186 ± 0.0
1.297ArgHis: 1.297 ± 0.0
1.945ArgIle: 1.945 ± 0.0
4.214ArgLys: 4.214 ± 0.0
3.89ArgLeu: 3.89 ± 0.0
0.972ArgMet: 0.972 ± 0.0
1.297ArgAsn: 1.297 ± 0.0
1.297ArgPro: 1.297 ± 0.0
1.297ArgGln: 1.297 ± 0.0
5.186ArgArg: 5.186 ± 0.0
2.917ArgSer: 2.917 ± 0.0
5.186ArgThr: 5.186 ± 0.0
6.159ArgVal: 6.159 ± 0.0
0.972ArgTrp: 0.972 ± 0.0
2.269ArgTyr: 2.269 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.186SerAla: 5.186 ± 0.0
1.297SerCys: 1.297 ± 0.0
4.214SerAsp: 4.214 ± 0.0
3.241SerGlu: 3.241 ± 0.0
1.945SerPhe: 1.945 ± 0.0
4.538SerGly: 4.538 ± 0.0
1.945SerHis: 1.945 ± 0.0
4.862SerIle: 4.862 ± 0.0
3.89SerLys: 3.89 ± 0.0
5.511SerLeu: 5.511 ± 0.0
1.945SerMet: 1.945 ± 0.0
3.89SerAsn: 3.89 ± 0.0
2.917SerPro: 2.917 ± 0.0
1.297SerGln: 1.297 ± 0.0
5.835SerArg: 5.835 ± 0.0
5.186SerSer: 5.186 ± 0.0
5.835SerThr: 5.835 ± 0.0
2.917SerVal: 2.917 ± 0.0
1.945SerTrp: 1.945 ± 0.0
1.945SerTyr: 1.945 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.538ThrAla: 4.538 ± 0.0
0.324ThrCys: 0.324 ± 0.0
3.241ThrAsp: 3.241 ± 0.0
3.89ThrGlu: 3.89 ± 0.0
3.241ThrPhe: 3.241 ± 0.0
4.214ThrGly: 4.214 ± 0.0
1.621ThrHis: 1.621 ± 0.0
3.241ThrIle: 3.241 ± 0.0
4.862ThrLys: 4.862 ± 0.0
3.89ThrLeu: 3.89 ± 0.0
4.214ThrMet: 4.214 ± 0.0
2.917ThrAsn: 2.917 ± 0.0
3.89ThrPro: 3.89 ± 0.0
1.945ThrGln: 1.945 ± 0.0
4.214ThrArg: 4.214 ± 0.0
6.807ThrSer: 6.807 ± 0.0
6.483ThrThr: 6.483 ± 0.0
6.159ThrVal: 6.159 ± 0.0
1.297ThrTrp: 1.297 ± 0.0
1.297ThrTyr: 1.297 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.511ValAla: 5.511 ± 0.0
0.648ValCys: 0.648 ± 0.0
4.862ValAsp: 4.862 ± 0.0
2.917ValGlu: 2.917 ± 0.0
1.297ValPhe: 1.297 ± 0.0
3.566ValGly: 3.566 ± 0.0
2.593ValHis: 2.593 ± 0.0
2.917ValIle: 2.917 ± 0.0
2.269ValLys: 2.269 ± 0.0
4.862ValLeu: 4.862 ± 0.0
1.621ValMet: 1.621 ± 0.0
1.621ValAsn: 1.621 ± 0.0
2.593ValPro: 2.593 ± 0.0
1.945ValGln: 1.945 ± 0.0
4.862ValArg: 4.862 ± 0.0
5.186ValSer: 5.186 ± 0.0
3.89ValThr: 3.89 ± 0.0
4.214ValVal: 4.214 ± 0.0
0.648ValTrp: 0.648 ± 0.0
0.972ValTyr: 0.972 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.324TrpAla: 0.324 ± 0.0
0.324TrpCys: 0.324 ± 0.0
1.297TrpAsp: 1.297 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.648TrpGly: 0.648 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.648TrpIle: 0.648 ± 0.0
0.648TrpLys: 0.648 ± 0.0
1.945TrpLeu: 1.945 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.648TrpAsn: 0.648 ± 0.0
0.972TrpPro: 0.972 ± 0.0
1.297TrpGln: 1.297 ± 0.0
0.324TrpArg: 0.324 ± 0.0
0.972TrpSer: 0.972 ± 0.0
0.648TrpThr: 0.648 ± 0.0
0.324TrpVal: 0.324 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.648TrpTyr: 0.648 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.214TyrAla: 4.214 ± 0.0
1.621TyrCys: 1.621 ± 0.0
2.917TyrAsp: 2.917 ± 0.0
1.621TyrGlu: 1.621 ± 0.0
1.621TyrPhe: 1.621 ± 0.0
3.241TyrGly: 3.241 ± 0.0
0.972TyrHis: 0.972 ± 0.0
3.241TyrIle: 3.241 ± 0.0
1.621TyrLys: 1.621 ± 0.0
1.945TyrLeu: 1.945 ± 0.0
0.972TyrMet: 0.972 ± 0.0
1.297TyrAsn: 1.297 ± 0.0
0.972TyrPro: 0.972 ± 0.0
0.648TyrGln: 0.648 ± 0.0
1.297TyrArg: 1.297 ± 0.0
3.566TyrSer: 3.566 ± 0.0
4.862TyrThr: 4.862 ± 0.0
1.621TyrVal: 1.621 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
2.917TyrTyr: 2.917 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3086 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski