Aeromicrobium terrae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Aeromicrobium

Average proteome isoelectric point is 5.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3087 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C8NNS0|A0A5C8NNS0_9ACTN Imidazoleglycerol-phosphate dehydratase OS=Aeromicrobium terrae OX=2498846 GN=hisB PE=3 SV=1
MM1 pKa = 7.75RR2 pKa = 11.84IEE4 pKa = 4.13SRR6 pKa = 11.84GVLAAVLTVFTLVGAGLLAVASPAGAATANISAEE40 pKa = 4.23CTPDD44 pKa = 3.44GNKK47 pKa = 8.78LTVEE51 pKa = 4.13LSGYY55 pKa = 10.64NSGNPSTVVLYY66 pKa = 10.57INDD69 pKa = 3.85SVFIAAGFFEE79 pKa = 5.1GFSGSYY85 pKa = 10.15SADD88 pKa = 3.2PTIDD92 pKa = 3.64VTWKK96 pKa = 10.0VQVTSSDD103 pKa = 3.98DD104 pKa = 3.65PDD106 pKa = 3.78GTTGATFTKK115 pKa = 9.64TISVDD120 pKa = 3.11ACVSSVTPQDD130 pKa = 3.39PTVTQAQCSGPGEE143 pKa = 4.28HH144 pKa = 7.1SDD146 pKa = 3.64PVVTFATGPDD156 pKa = 3.69HH157 pKa = 6.6VTYY160 pKa = 10.36DD161 pKa = 3.79YY162 pKa = 11.85DD163 pKa = 4.24DD164 pKa = 3.91ATHH167 pKa = 7.15LVTATAVATSDD178 pKa = 2.9MTYY181 pKa = 10.79RR182 pKa = 11.84FDD184 pKa = 3.67TVPAGWTKK192 pKa = 10.72VDD194 pKa = 3.52DD195 pKa = 3.61THH197 pKa = 6.87ATFEE201 pKa = 4.36VTLTDD206 pKa = 3.92PGTCIVEE213 pKa = 4.21VTPTPPTVVPAQTCGDD229 pKa = 3.73DD230 pKa = 4.05VLNVPADD237 pKa = 3.81TAGITYY243 pKa = 8.69TRR245 pKa = 11.84ADD247 pKa = 4.14DD248 pKa = 4.56GSSVTATAGTGYY260 pKa = 9.67EE261 pKa = 4.17LPGGARR267 pKa = 11.84SQTWTNRR274 pKa = 11.84VDD276 pKa = 3.51YY277 pKa = 10.74EE278 pKa = 4.27YY279 pKa = 9.94DD280 pKa = 3.21TVANGGAEE288 pKa = 4.18ACPDD292 pKa = 3.85PPGDD296 pKa = 4.1PDD298 pKa = 4.36DD299 pKa = 5.44PGVSDD304 pKa = 3.96SSGPAADD311 pKa = 4.24ISDD314 pKa = 4.04SSGVLPDD321 pKa = 4.16TGSSMTPVVLGIALALLVGGCLVVRR346 pKa = 11.84RR347 pKa = 11.84RR348 pKa = 11.84LTT350 pKa = 3.15

Molecular weight: 35.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C8NG56|A0A5C8NG56_9ACTN 2-oxoacid:ferredoxin oxidoreductase subunit beta OS=Aeromicrobium terrae OX=2498846 GN=FHP06_12475 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.56KK16 pKa = 9.27HH17 pKa = 5.36RR18 pKa = 11.84KK19 pKa = 5.5MLKK22 pKa = 7.41RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3087

0

3087

983032

33

3029

318.4

34.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.484 ± 0.066

0.69 ± 0.012

6.839 ± 0.038

5.873 ± 0.046

2.941 ± 0.028

8.928 ± 0.042

2.202 ± 0.022

3.932 ± 0.033

2.443 ± 0.045

9.997 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.949 ± 0.019

1.873 ± 0.026

5.285 ± 0.026

2.777 ± 0.022

7.269 ± 0.054

5.445 ± 0.034

6.134 ± 0.049

9.516 ± 0.045

1.454 ± 0.019

1.968 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski