Lactobacillus vini DSM 20605

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Liquorilactobacillus; Liquorilactobacillus vini

Average proteome isoelectric point is 7.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2108 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2C681|A0A0R2C681_9LACO Uncharacterized protein OS=Lactobacillus vini DSM 20605 OX=1133569 GN=FD21_GL001447 PE=4 SV=1
MM1 pKa = 6.35EE2 pKa = 4.44TVRR5 pKa = 11.84VFIVNLGYY13 pKa = 10.8YY14 pKa = 9.48NQGKK18 pKa = 6.46TTGKK22 pKa = 9.32WFTPPLYY29 pKa = 9.43PDD31 pKa = 5.54AIAEE35 pKa = 4.01QLEE38 pKa = 4.38LKK40 pKa = 10.48NDD42 pKa = 3.5SEE44 pKa = 4.9EE45 pKa = 4.28YY46 pKa = 10.44AIHH49 pKa = 7.62DD50 pKa = 3.83YY51 pKa = 9.66EE52 pKa = 5.82APFEE56 pKa = 4.18IDD58 pKa = 3.38RR59 pKa = 11.84FDD61 pKa = 5.72SIDD64 pKa = 3.83EE65 pKa = 4.16INRR68 pKa = 11.84KK69 pKa = 8.59YY70 pKa = 10.79AALEE74 pKa = 3.7RR75 pKa = 11.84LEE77 pKa = 5.22EE78 pKa = 4.16YY79 pKa = 11.01DD80 pKa = 4.14FGADD84 pKa = 3.17VSALIGEE91 pKa = 4.7WFRR94 pKa = 11.84DD95 pKa = 3.48IEE97 pKa = 4.19EE98 pKa = 4.21LAEE101 pKa = 4.04NAEE104 pKa = 4.84DD105 pKa = 3.27IVIYY109 pKa = 10.69KK110 pKa = 10.11GVSDD114 pKa = 4.06MAEE117 pKa = 3.94LAQDD121 pKa = 3.61AVEE124 pKa = 4.5SGAIFGDD131 pKa = 4.29LPDD134 pKa = 3.66QVIAYY139 pKa = 10.24LDD141 pKa = 4.06FEE143 pKa = 4.49ALGRR147 pKa = 11.84DD148 pKa = 3.37IEE150 pKa = 4.34IEE152 pKa = 3.99GNYY155 pKa = 10.28LVTNSAIYY163 pKa = 10.05EE164 pKa = 4.22YY165 pKa = 11.49ANN167 pKa = 3.22

Molecular weight: 19.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2CHI2|A0A0R2CHI2_9LACO Site-specific recombinase OS=Lactobacillus vini DSM 20605 OX=1133569 GN=FD21_GL001615 PE=4 SV=1
MM1 pKa = 7.88RR2 pKa = 11.84LTVKK6 pKa = 10.19VVARR10 pKa = 11.84LWRR13 pKa = 11.84HH14 pKa = 4.35IQVLQRR20 pKa = 11.84GMQIQQAAANQARR33 pKa = 11.84IQAQQQHH40 pKa = 5.05QVVKK44 pKa = 10.79VRR46 pKa = 11.84ILAQLNRR53 pKa = 11.84VQIQQAAVNQARR65 pKa = 11.84IQAQRR70 pKa = 11.84QRR72 pKa = 11.84QVVKK76 pKa = 10.98ARR78 pKa = 11.84MLAQLNRR85 pKa = 11.84VQIQQAAANQVRR97 pKa = 11.84IQAQQQRR104 pKa = 11.84QVVKK108 pKa = 11.01ARR110 pKa = 11.84MLAQLNRR117 pKa = 11.84VQIQQAAANQVRR129 pKa = 11.84IQAQQQRR136 pKa = 11.84QVVKK140 pKa = 11.01ARR142 pKa = 11.84MLAQLNRR149 pKa = 11.84VQIQQAAANQVRR161 pKa = 11.84IQAQQQRR168 pKa = 11.84QVVKK172 pKa = 11.01ARR174 pKa = 11.84MLAQLNRR181 pKa = 11.84VQIQQAAANQVRR193 pKa = 11.84TQAQRR198 pKa = 11.84QHH200 pKa = 5.27QVAKK204 pKa = 10.82ARR206 pKa = 11.84ILAQLNQVRR215 pKa = 11.84IPQAAANQVRR225 pKa = 11.84IQAQRR230 pKa = 11.84QHH232 pKa = 5.3QVAKK236 pKa = 10.94ARR238 pKa = 11.84MLAQLNRR245 pKa = 11.84VRR247 pKa = 11.84IPQAAANQVRR257 pKa = 11.84IQAQRR262 pKa = 11.84QCQVVKK268 pKa = 10.9VRR270 pKa = 11.84IQLII274 pKa = 3.74

Molecular weight: 31.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2108

0

2108

626100

44

1489

297.0

33.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.118 ± 0.055

0.657 ± 0.016

4.879 ± 0.041

5.01 ± 0.049

4.542 ± 0.045

6.391 ± 0.048

2.008 ± 0.022

7.431 ± 0.048

7.145 ± 0.05

10.92 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.306 ± 0.023

4.742 ± 0.035

3.578 ± 0.027

5.745 ± 0.057

3.934 ± 0.038

5.933 ± 0.058

5.582 ± 0.045

6.598 ± 0.047

1.041 ± 0.021

3.433 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski