Tatumella morbirosei

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Tatumella

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3697 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A095TEG5|A0A095TEG5_9GAMM Uncharacterized protein OS=Tatumella morbirosei OX=642227 GN=HA49_06490 PE=4 SV=1
MM1 pKa = 7.81KK2 pKa = 10.19IGLFYY7 pKa = 10.96GSSTCYY13 pKa = 10.19TEE15 pKa = 4.84IVAEE19 pKa = 4.59KK20 pKa = 10.16IRR22 pKa = 11.84DD23 pKa = 4.11FIGADD28 pKa = 3.5LVTLHH33 pKa = 5.95NVKK36 pKa = 10.76DD37 pKa = 3.84GTTEE41 pKa = 3.75SMQYY45 pKa = 10.92YY46 pKa = 10.25DD47 pKa = 4.9LLIMGIPTWDD57 pKa = 3.41FGEE60 pKa = 4.35LQEE63 pKa = 4.58DD64 pKa = 4.38WEE66 pKa = 5.36AIWPMLPDD74 pKa = 3.98LQLQGKK80 pKa = 8.73IVALYY85 pKa = 11.06GMGDD89 pKa = 3.46QIGYY93 pKa = 8.42SEE95 pKa = 4.58WFLDD99 pKa = 4.0ALGMLHH105 pKa = 7.65DD106 pKa = 5.49LLQPMGVRR114 pKa = 11.84FIGYY118 pKa = 7.91WPTEE122 pKa = 3.78GFEE125 pKa = 4.74FISQKK130 pKa = 10.93AVVPGGSQFVGLALDD145 pKa = 4.41DD146 pKa = 4.14VNQFEE151 pKa = 4.52QTDD154 pKa = 3.56EE155 pKa = 6.03RR156 pKa = 11.84IEE158 pKa = 3.98QWCEE162 pKa = 3.55QILTEE167 pKa = 4.99MSDD170 pKa = 3.57LLL172 pKa = 4.68

Molecular weight: 19.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A095V0Z6|A0A095V0Z6_9GAMM Uncharacterized protein OS=Tatumella morbirosei OX=642227 GN=HA49_00455 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSKK46 pKa = 10.99

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3697

0

3697

1154041

29

1484

312.2

34.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.443 ± 0.049

1.073 ± 0.014

5.056 ± 0.034

5.323 ± 0.04

3.844 ± 0.027

7.496 ± 0.034

2.309 ± 0.019

5.908 ± 0.031

3.874 ± 0.033

11.011 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.624 ± 0.02

3.606 ± 0.026

4.637 ± 0.026

5.037 ± 0.04

5.648 ± 0.033

6.545 ± 0.035

5.398 ± 0.03

6.92 ± 0.033

1.45 ± 0.016

2.8 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski