Corynebacterium heidelbergense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1960 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A364V7Z4|A0A364V7Z4_9CORY DUF2993 domain-containing protein OS=Corynebacterium heidelbergense OX=2055947 GN=DLJ54_01785 PE=4 SV=1
MM1 pKa = 7.57LNGPTTFDD9 pKa = 3.24VDD11 pKa = 3.73GMSCEE16 pKa = 3.98HH17 pKa = 7.0CVRR20 pKa = 11.84AVTNAVSAIPGASDD34 pKa = 3.14VRR36 pKa = 11.84VDD38 pKa = 4.05LGSGTVAFVAADD50 pKa = 3.65VPEE53 pKa = 4.32VAVVDD58 pKa = 5.22AIDD61 pKa = 3.99DD62 pKa = 3.92AGYY65 pKa = 10.58DD66 pKa = 3.69ATLHH70 pKa = 5.98HH71 pKa = 7.05APP73 pKa = 4.36

Molecular weight: 7.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A364V8G2|A0A364V8G2_9CORY Fumarate reductase/succinate dehydrogenase flavoprotein subunit OS=Corynebacterium heidelbergense OX=2055947 GN=DLJ54_01085 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AVVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.2GRR42 pKa = 11.84KK43 pKa = 6.84TLTAA47 pKa = 4.25

Molecular weight: 5.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1960

0

1960

659679

30

2172

336.6

36.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.171 ± 0.07

0.769 ± 0.015

5.741 ± 0.049

6.033 ± 0.051

3.055 ± 0.032

9.038 ± 0.053

2.274 ± 0.026

4.389 ± 0.043

2.847 ± 0.043

9.308 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.139 ± 0.024

2.629 ± 0.034

5.616 ± 0.045

3.642 ± 0.034

6.978 ± 0.056

5.78 ± 0.039

5.852 ± 0.035

8.22 ± 0.046

1.395 ± 0.024

2.123 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski