Gammapapillomavirus 13

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALR9|A0A2D2ALR9_9PAPI Protein E6 OS=Gammapapillomavirus 13 OX=1513258 GN=E6 PE=3 SV=1
MM1 pKa = 7.24SRR3 pKa = 11.84ARR5 pKa = 11.84RR6 pKa = 11.84TKK8 pKa = 9.73RR9 pKa = 11.84ASVQDD14 pKa = 4.7LYY16 pKa = 10.98TSCKK20 pKa = 10.4LGGDD24 pKa = 3.74CPEE27 pKa = 4.09DD28 pKa = 3.27VKK30 pKa = 11.65NKK32 pKa = 10.07VEE34 pKa = 4.07NTTLADD40 pKa = 3.79RR41 pKa = 11.84LLQILGSVVYY51 pKa = 9.79FGQLGIGSGKK61 pKa = 8.28GTGGITGYY69 pKa = 10.59RR70 pKa = 11.84PLQNTPRR77 pKa = 11.84VGTNRR82 pKa = 11.84PIEE85 pKa = 4.43SIRR88 pKa = 11.84PNIPIDD94 pKa = 3.64PLGGSDD100 pKa = 4.51IIPPTVIDD108 pKa = 3.41ATAPSVVPLTEE119 pKa = 3.96TGTPEE124 pKa = 3.68VNIISSGTGTNIEE137 pKa = 4.59LGEE140 pKa = 4.23LDD142 pKa = 4.39IITNVDD148 pKa = 3.44PTSTAVGTAEE158 pKa = 4.25HH159 pKa = 6.95PAVIDD164 pKa = 3.6VTDD167 pKa = 4.05EE168 pKa = 4.07GTSVIDD174 pKa = 3.94VQSGPPPPKK183 pKa = 9.87RR184 pKa = 11.84LQIDD188 pKa = 3.75SSLKK192 pKa = 8.95PYY194 pKa = 10.22EE195 pKa = 4.68HH196 pKa = 7.43IEE198 pKa = 4.03LTVYY202 pKa = 10.36PPYY205 pKa = 10.47NQSDD209 pKa = 3.86PNVNVFVDD217 pKa = 3.56THH219 pKa = 6.5FGGDD223 pKa = 3.79PVGVDD228 pKa = 3.35YY229 pKa = 11.03TSFSDD234 pKa = 3.45VNLRR238 pKa = 11.84EE239 pKa = 4.04EE240 pKa = 5.07FEE242 pKa = 4.17IEE244 pKa = 3.88QNIPRR249 pKa = 11.84SSTPANKK256 pKa = 10.23NIATKK261 pKa = 10.71AKK263 pKa = 10.37DD264 pKa = 3.14LYY266 pKa = 11.17QRR268 pKa = 11.84FTLQVPTQSLGAVARR283 pKa = 11.84PSRR286 pKa = 11.84QVTFQFEE293 pKa = 4.11NPAFSEE299 pKa = 4.33DD300 pKa = 2.94VTMAFNQDD308 pKa = 3.37VEE310 pKa = 4.71EE311 pKa = 4.36VTAAPNEE318 pKa = 4.06QFRR321 pKa = 11.84DD322 pKa = 3.4IQTLSRR328 pKa = 11.84PRR330 pKa = 11.84FSEE333 pKa = 4.17TEE335 pKa = 3.95SGHH338 pKa = 5.73VRR340 pKa = 11.84LSRR343 pKa = 11.84IGQKK347 pKa = 10.98ASMKK351 pKa = 9.17TRR353 pKa = 11.84SGLIIGEE360 pKa = 4.2RR361 pKa = 11.84VHH363 pKa = 6.15YY364 pKa = 9.69FYY366 pKa = 10.68DD367 pKa = 3.46ISDD370 pKa = 3.43ITVGEE375 pKa = 4.26NIEE378 pKa = 4.57LPTISSSVQTSGEE391 pKa = 4.28SIIQDD396 pKa = 3.57SQIDD400 pKa = 4.62GIVLDD405 pKa = 5.01EE406 pKa = 4.52NLLDD410 pKa = 5.54DD411 pKa = 4.48FAEE414 pKa = 4.66DD415 pKa = 4.05FSNAHH420 pKa = 7.11LIFTTTDD427 pKa = 3.1EE428 pKa = 4.55FNEE431 pKa = 4.25SVDD434 pKa = 3.69IIGIPPEE441 pKa = 4.33FGLKK445 pKa = 9.25TFIPQYY451 pKa = 9.89TNNSLDD457 pKa = 3.36SSQISMPVLPLSIPSAPLYY476 pKa = 8.74PAAVIIFGEE485 pKa = 4.55DD486 pKa = 3.69YY487 pKa = 10.8IIDD490 pKa = 4.12PYY492 pKa = 9.98YY493 pKa = 10.69LRR495 pKa = 11.84RR496 pKa = 11.84KK497 pKa = 9.16RR498 pKa = 11.84KK499 pKa = 9.65RR500 pKa = 11.84VDD502 pKa = 4.5FYY504 pKa = 11.93

Molecular weight: 55.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALR4|A0A2D2ALR4_9PAPI Minor capsid protein L2 OS=Gammapapillomavirus 13 OX=1513258 GN=L2 PE=3 SV=1
MM1 pKa = 7.01NQADD5 pKa = 3.84LTRR8 pKa = 11.84RR9 pKa = 11.84FDD11 pKa = 3.67ALQDD15 pKa = 3.6EE16 pKa = 5.22LLTLIEE22 pKa = 4.94SGSDD26 pKa = 3.39DD27 pKa = 4.34LSTQIRR33 pKa = 11.84HH34 pKa = 5.47WEE36 pKa = 4.01LNRR39 pKa = 11.84KK40 pKa = 9.2INVTMYY46 pKa = 9.29YY47 pKa = 10.24GRR49 pKa = 11.84KK50 pKa = 9.09EE51 pKa = 4.02GYY53 pKa = 10.24KK54 pKa = 10.59NFGLQQLPAPQVSEE68 pKa = 4.4YY69 pKa = 10.03NAKK72 pKa = 10.25LAITMQILLKK82 pKa = 10.81SLATSQYY89 pKa = 10.71KK90 pKa = 9.9SEE92 pKa = 4.11PWSLTDD98 pKa = 3.11TSTEE102 pKa = 4.02VLLTPPKK109 pKa = 10.82NCFKK113 pKa = 11.11KK114 pKa = 10.45LGYY117 pKa = 7.91QVKK120 pKa = 7.97VTFDD124 pKa = 4.52DD125 pKa = 4.8DD126 pKa = 3.94PEE128 pKa = 5.89NYY130 pKa = 9.33MLYY133 pKa = 9.87TNWDD137 pKa = 3.62AIYY140 pKa = 10.54YY141 pKa = 10.01QDD143 pKa = 5.68LQDD146 pKa = 3.39IWHH149 pKa = 6.65KK150 pKa = 10.9VPGGVDD156 pKa = 3.51HH157 pKa = 7.22NGLYY161 pKa = 10.48YY162 pKa = 10.78DD163 pKa = 4.66DD164 pKa = 3.89VTGEE168 pKa = 3.96RR169 pKa = 11.84NYY171 pKa = 10.85FLLFQPEE178 pKa = 4.0AEE180 pKa = 4.45RR181 pKa = 11.84YY182 pKa = 7.7GKK184 pKa = 10.41SGIWTVQYY192 pKa = 11.37KK193 pKa = 8.4NTTLSSIVTSSSKK206 pKa = 10.67YY207 pKa = 9.77SSAGYY212 pKa = 8.75SAEE215 pKa = 3.97YY216 pKa = 8.98TADD219 pKa = 3.3SGGYY223 pKa = 9.26SSPEE227 pKa = 3.72EE228 pKa = 4.09GTSRR232 pKa = 11.84RR233 pKa = 11.84SQEE236 pKa = 3.53ASSRR240 pKa = 11.84SSGQPTSTSEE250 pKa = 3.47VGRR253 pKa = 11.84RR254 pKa = 11.84RR255 pKa = 11.84RR256 pKa = 11.84KK257 pKa = 9.09QGEE260 pKa = 4.25SGTEE264 pKa = 3.57RR265 pKa = 11.84STGGVSRR272 pKa = 11.84KK273 pKa = 7.85RR274 pKa = 11.84QRR276 pKa = 11.84PTSAPSPEE284 pKa = 4.31EE285 pKa = 3.41VGRR288 pKa = 11.84RR289 pKa = 11.84HH290 pKa = 5.81QSLPRR295 pKa = 11.84TGLSRR300 pKa = 11.84LRR302 pKa = 11.84RR303 pKa = 11.84LEE305 pKa = 3.89EE306 pKa = 3.83EE307 pKa = 4.38ARR309 pKa = 11.84DD310 pKa = 3.89PPLLLIKK317 pKa = 10.54GPPNTLKK324 pKa = 10.54CWRR327 pKa = 11.84FRR329 pKa = 11.84CNNRR333 pKa = 11.84CGHH336 pKa = 7.24LFTSISTVFKK346 pKa = 8.8WTSDD350 pKa = 3.6DD351 pKa = 3.67YY352 pKa = 11.96CNNPLQANGRR362 pKa = 11.84MLISFKK368 pKa = 10.79DD369 pKa = 3.35LQQRR373 pKa = 11.84QKK375 pKa = 11.02FITHH379 pKa = 5.21VNIPRR384 pKa = 11.84HH385 pKa = 4.54TSYY388 pKa = 11.85ALGSVDD394 pKa = 4.47SLL396 pKa = 3.95

Molecular weight: 45.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2383

96

603

340.4

38.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.952 ± 0.52

2.14 ± 0.7

7.092 ± 0.439

5.791 ± 0.339

4.784 ± 0.597

5.455 ± 0.573

1.804 ± 0.271

6.253 ± 0.871

5.287 ± 0.783

8.687 ± 0.56

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.385 ± 0.274

5.371 ± 0.511

6.085 ± 0.841

4.658 ± 0.251

5.749 ± 0.611

7.637 ± 1.123

6.42 ± 0.627

5.791 ± 0.605

1.175 ± 0.324

3.483 ± 0.451
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski