Deer faeces associated circular DNA virus 1

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A161IBA2|A0A161IBA2_9VIRU Replication associated protein OS=Deer faeces associated circular DNA virus 1 OX=1843767 PE=4 SV=1
MM1 pKa = 8.24RR2 pKa = 11.84SRR4 pKa = 11.84TYY6 pKa = 10.43CYY8 pKa = 10.02TSFKK12 pKa = 10.31EE13 pKa = 4.03SEE15 pKa = 4.25PFVDD19 pKa = 3.07INQIVFQIHH28 pKa = 4.72QLEE31 pKa = 4.3ICEE34 pKa = 4.52TTGRR38 pKa = 11.84PHH40 pKa = 5.86WQGIVAFPNAKK51 pKa = 10.25APVGVKK57 pKa = 9.91QYY59 pKa = 11.37LCDD62 pKa = 3.49TSAHH66 pKa = 6.17IEE68 pKa = 4.01YY69 pKa = 9.01TKK71 pKa = 10.72NIPASIAYY79 pKa = 7.01CTKK82 pKa = 10.34EE83 pKa = 3.86EE84 pKa = 4.16TRR86 pKa = 11.84VDD88 pKa = 3.86GPFSYY93 pKa = 9.09GTVPDD98 pKa = 4.94LEE100 pKa = 4.99PDD102 pKa = 3.33NWWQQLSDD110 pKa = 3.55VQLWTEE116 pKa = 3.67HH117 pKa = 6.04SKK119 pKa = 10.48WMLRR123 pKa = 11.84NYY125 pKa = 10.55NGVAAFRR132 pKa = 11.84KK133 pKa = 9.84SIKK136 pKa = 9.97CVYY139 pKa = 10.06APRR142 pKa = 11.84ATPTVILLFGEE153 pKa = 4.41TGSGKK158 pKa = 10.11SRR160 pKa = 11.84AARR163 pKa = 11.84EE164 pKa = 3.87LAGDD168 pKa = 3.77EE169 pKa = 5.17LYY171 pKa = 10.01PKK173 pKa = 10.58PMGAWWDD180 pKa = 3.9GYY182 pKa = 9.91RR183 pKa = 11.84GHH185 pKa = 6.94RR186 pKa = 11.84VVLFDD191 pKa = 4.73DD192 pKa = 5.41FYY194 pKa = 11.9GNEE197 pKa = 4.06QYY199 pKa = 11.44SDD201 pKa = 3.68LLRR204 pKa = 11.84WLSEE208 pKa = 4.04LPISVPYY215 pKa = 10.38KK216 pKa = 10.84GGFTPLLADD225 pKa = 3.78RR226 pKa = 11.84FFFTSNAHH234 pKa = 5.82PRR236 pKa = 11.84DD237 pKa = 4.05WYY239 pKa = 10.56PNIPDD244 pKa = 4.71KK245 pKa = 11.05SALWRR250 pKa = 11.84RR251 pKa = 11.84VTKK254 pKa = 10.16IYY256 pKa = 10.94EE257 pKa = 4.16CFLDD261 pKa = 5.14RR262 pKa = 11.84FLICDD267 pKa = 3.9KK268 pKa = 10.91KK269 pKa = 10.59STLII273 pKa = 3.96

Molecular weight: 31.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A161IBA2|A0A161IBA2_9VIRU Replication associated protein OS=Deer faeces associated circular DNA virus 1 OX=1843767 PE=4 SV=1
MM1 pKa = 7.36SLGVIPRR8 pKa = 11.84VWPLIARR15 pKa = 11.84GIQRR19 pKa = 11.84LEE21 pKa = 4.17TYY23 pKa = 10.07PGGPRR28 pKa = 11.84GFAEE32 pKa = 3.9DD33 pKa = 3.48VVRR36 pKa = 11.84GVGYY40 pKa = 10.09GIQGYY45 pKa = 9.03KK46 pKa = 8.12VAKK49 pKa = 10.02NIAKK53 pKa = 10.09AYY55 pKa = 8.99GVHH58 pKa = 6.28KK59 pKa = 10.49VIEE62 pKa = 4.31AEE64 pKa = 4.01RR65 pKa = 11.84SVKK68 pKa = 10.16KK69 pKa = 10.24SRR71 pKa = 11.84KK72 pKa = 9.17NIQSIDD78 pKa = 3.43NPFMVKK84 pKa = 9.57RR85 pKa = 11.84RR86 pKa = 11.84FAGSIIRR93 pKa = 11.84RR94 pKa = 11.84RR95 pKa = 11.84RR96 pKa = 11.84RR97 pKa = 11.84RR98 pKa = 11.84PLRR101 pKa = 11.84RR102 pKa = 11.84PTHH105 pKa = 6.51RR106 pKa = 11.84FRR108 pKa = 11.84AGKK111 pKa = 10.04SRR113 pKa = 11.84FGHH116 pKa = 4.71GRR118 pKa = 11.84RR119 pKa = 11.84RR120 pKa = 11.84FGRR123 pKa = 11.84RR124 pKa = 11.84FGRR127 pKa = 11.84GGVKK131 pKa = 9.45RR132 pKa = 11.84VHH134 pKa = 6.14HH135 pKa = 7.31AIPTVTSRR143 pKa = 11.84EE144 pKa = 3.89FSMVTSFADD153 pKa = 3.92GARR156 pKa = 11.84YY157 pKa = 9.32LPLSIANSVTPSQFFQFFKK176 pKa = 10.35EE177 pKa = 4.15YY178 pKa = 10.22RR179 pKa = 11.84LEE181 pKa = 4.31RR182 pKa = 11.84CLVALRR188 pKa = 11.84RR189 pKa = 11.84RR190 pKa = 11.84RR191 pKa = 11.84PPCSVFEE198 pKa = 4.32SATGGNTVAAGRR210 pKa = 11.84EE211 pKa = 4.11EE212 pKa = 4.25TNDD215 pKa = 3.46IYY217 pKa = 10.47WVPWSTTDD225 pKa = 5.4LPVQHH230 pKa = 6.86PRR232 pKa = 11.84QIKK235 pKa = 7.45SARR238 pKa = 11.84MLTAMWSVCPIRR250 pKa = 11.84QRR252 pKa = 11.84CIEE255 pKa = 4.12MKK257 pKa = 10.54LINRR261 pKa = 11.84PLDD264 pKa = 3.85DD265 pKa = 4.37FLATIGGVPPNQIVTDD281 pKa = 4.01NSWAGTTQKK290 pKa = 10.43FPGYY294 pKa = 10.15AVQSWTRR301 pKa = 11.84MPWQQTDD308 pKa = 2.77ASLGDD313 pKa = 3.37RR314 pKa = 11.84HH315 pKa = 6.24LVHH318 pKa = 7.02VSQLLVLFLCLVLRR332 pKa = 11.84LFLVFRR338 pKa = 11.84ILIPFRR344 pKa = 11.84LTVFGG349 pKa = 4.4

Molecular weight: 39.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

622

273

349

311.0

35.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.27 ± 0.025

1.929 ± 0.372

4.18 ± 0.986

4.18 ± 0.771

5.788 ± 0.172

7.074 ± 0.712

2.251 ± 0.031

5.788 ± 0.172

4.662 ± 0.488

7.556 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.608 ± 0.299

2.894 ± 0.236

6.431 ± 0.095

3.698 ± 0.235

10.129 ± 2.289

6.109 ± 0.069

5.788 ± 0.258

7.235 ± 1.021

2.733 ± 0.546

3.698 ± 1.054
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski