Taro bacilliform CH virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 7.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0E3LZB2|A0A0E3LZB2_9VIRU Uncharacterized protein OS=Taro bacilliform CH virus OX=1634914 PE=4 SV=1
MM1 pKa = 7.46EE2 pKa = 4.83NAADD6 pKa = 4.08NYY8 pKa = 10.73CKK10 pKa = 9.98ILKK13 pKa = 10.01EE14 pKa = 3.97MAQLPKK20 pKa = 10.68PMTLLHH26 pKa = 5.73EE27 pKa = 4.53MSRR30 pKa = 11.84EE31 pKa = 3.78ALLEE35 pKa = 3.86RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 10.16VQSQLTLALQEE49 pKa = 4.32MEE51 pKa = 4.18QCLLAQYY58 pKa = 10.97SYY60 pKa = 11.2FSQHH64 pKa = 5.11ATKK67 pKa = 10.71DD68 pKa = 3.96NYY70 pKa = 10.21WGDD73 pKa = 3.66HH74 pKa = 5.67LQDD77 pKa = 3.67LQEE80 pKa = 4.06QMEE83 pKa = 4.64AFHH86 pKa = 7.1KK87 pKa = 9.6LTISIMEE94 pKa = 4.42CTLHH98 pKa = 5.95TAHH101 pKa = 7.41PP102 pKa = 4.13

Molecular weight: 11.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0E3LXE8|A0A0E3LXE8_9VIRU Uncharacterized protein OS=Taro bacilliform CH virus OX=1634914 PE=4 SV=1
MM1 pKa = 6.4QQKK4 pKa = 6.25TTTGEE9 pKa = 3.78TTYY12 pKa = 10.97KK13 pKa = 10.17IFRR16 pKa = 11.84NRR18 pKa = 11.84WRR20 pKa = 11.84HH21 pKa = 4.06STNSQLALWNAPYY34 pKa = 9.18TQLTRR39 pKa = 11.84EE40 pKa = 4.23AMVGPLLKK48 pKa = 10.23TMFGVGTKK56 pKa = 9.82PYY58 pKa = 9.92RR59 pKa = 11.84AILAHH64 pKa = 6.61HH65 pKa = 7.05SGPLLSVEE73 pKa = 4.95RR74 pKa = 11.84IRR76 pKa = 11.84FLKK79 pKa = 10.35SYY81 pKa = 9.56HH82 pKa = 5.88FCCFLYY88 pKa = 9.75TQTRR92 pKa = 11.84DD93 pKa = 3.48AITQRR98 pKa = 11.84TMGPHH103 pKa = 6.23AHH105 pKa = 7.11PLL107 pKa = 3.47

Molecular weight: 12.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2402

102

1803

400.3

45.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.87 ± 0.67

1.79 ± 0.378

4.621 ± 1.108

7.619 ± 1.272

3.372 ± 0.489

5.329 ± 1.02

2.706 ± 0.683

6.869 ± 1.3

6.661 ± 0.906

8.868 ± 2.222

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.748 ± 1.08

4.704 ± 0.466

4.788 ± 0.386

5.704 ± 0.573

5.62 ± 0.554

6.661 ± 0.653

6.162 ± 1.484

4.663 ± 0.711

1.291 ± 0.196

3.955 ± 0.659
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski