Babaco mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 7.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4ZU36|A0A2H4ZU36_9VIRU Coat protein OS=Babaco mosaic virus OX=2060511 PE=3 SV=1
MM1 pKa = 7.7ASLGEE6 pKa = 4.09IKK8 pKa = 10.09IALAVFVLALAIFTLLNSNKK28 pKa = 9.79RR29 pKa = 11.84EE30 pKa = 3.97TCLVEE35 pKa = 4.52VSATLSRR42 pKa = 11.84VSGQDD47 pKa = 3.07CRR49 pKa = 11.84HH50 pKa = 5.61ITPEE54 pKa = 4.35IIQALGEE61 pKa = 4.13ALVGLRR67 pKa = 11.84LL68 pKa = 3.54

Molecular weight: 7.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4ZU43|A0A2H4ZU43_9VIRU TGB1 OS=Babaco mosaic virus OX=2060511 PE=4 SV=1
MM1 pKa = 7.56SEE3 pKa = 4.67LPRR6 pKa = 11.84SLTPPSDD13 pKa = 3.4NSSAILAVAVGIGLALFTFTLLSYY37 pKa = 10.5KK38 pKa = 10.67LPVPGDD44 pKa = 4.08NIHH47 pKa = 6.37SLPFGGYY54 pKa = 9.28YY55 pKa = 9.62RR56 pKa = 11.84DD57 pKa = 3.71GTKK60 pKa = 10.35SISYY64 pKa = 9.84NSPRR68 pKa = 11.84SQASASKK75 pKa = 10.28SVPALLVLALVAAIYY90 pKa = 10.13GITWGDD96 pKa = 3.32KK97 pKa = 8.86NRR99 pKa = 11.84ARR101 pKa = 11.84GVRR104 pKa = 11.84ACPCHH109 pKa = 6.32LHH111 pKa = 6.73SPQQ114 pKa = 3.52

Molecular weight: 12.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2167

68

1539

433.4

48.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.891 ± 0.899

1.569 ± 0.171

3.922 ± 0.599

6.645 ± 1.24

4.707 ± 0.421

5.584 ± 0.417

3.0 ± 0.734

5.722 ± 0.534

6.876 ± 1.427

9.737 ± 1.089

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.8 ± 0.362

4.107 ± 0.966

6.184 ± 0.601

4.107 ± 0.553

4.246 ± 0.428

8.491 ± 1.255

6.184 ± 0.49

5.215 ± 0.707

1.061 ± 0.24

2.953 ± 0.592
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski