Chicken stool-associated gemycircularvirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga2

Average proteome isoelectric point is 8.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L6KW52|A0A1L6KW52_9VIRU Capsid protein OS=Chicken stool-associated gemycircularvirus OX=1930298 PE=4 SV=1
MM1 pKa = 6.97TRR3 pKa = 11.84FRR5 pKa = 11.84LRR7 pKa = 11.84AKK9 pKa = 10.2IFFLTYY15 pKa = 9.88SQIGEE20 pKa = 4.22DD21 pKa = 3.93VIQEE25 pKa = 4.06LRR27 pKa = 11.84STPTQHH33 pKa = 6.22FRR35 pKa = 11.84FIEE38 pKa = 4.3EE39 pKa = 4.18VLGTPSDD46 pKa = 3.75YY47 pKa = 10.65RR48 pKa = 11.84LSRR51 pKa = 11.84EE52 pKa = 3.93SHH54 pKa = 5.87QDD56 pKa = 3.22GASHH60 pKa = 6.11LHH62 pKa = 6.05CVVGYY67 pKa = 11.22AEE69 pKa = 4.23TQLVNSASLFDD80 pKa = 3.86YY81 pKa = 10.78RR82 pKa = 11.84GAHH85 pKa = 6.31PNIKK89 pKa = 10.01SIRR92 pKa = 11.84GTIKK96 pKa = 10.75KK97 pKa = 8.29PWNYY101 pKa = 10.43AGKK104 pKa = 10.17DD105 pKa = 3.04GDD107 pKa = 4.55IIHH110 pKa = 6.86EE111 pKa = 4.36LGGPNGGDD119 pKa = 3.11SGTGGSIAEE128 pKa = 4.23RR129 pKa = 11.84WSHH132 pKa = 7.12AIDD135 pKa = 4.55APTEE139 pKa = 3.97DD140 pKa = 3.72EE141 pKa = 4.03FFEE144 pKa = 4.44RR145 pKa = 11.84VRR147 pKa = 11.84MADD150 pKa = 3.08PRR152 pKa = 11.84SYY154 pKa = 11.68VLFNRR159 pKa = 11.84AIVQYY164 pKa = 11.01ANKK167 pKa = 9.77IYY169 pKa = 10.33RR170 pKa = 11.84KK171 pKa = 8.14PRR173 pKa = 11.84EE174 pKa = 3.89YY175 pKa = 10.01TSPRR179 pKa = 11.84FRR181 pKa = 11.84LLGGSRR187 pKa = 11.84IEE189 pKa = 4.24GWLSQSDD196 pKa = 3.43LGRR199 pKa = 11.84RR200 pKa = 11.84GGEE203 pKa = 3.74RR204 pKa = 3.19

Molecular weight: 23.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L6KW52|A0A1L6KW52_9VIRU Capsid protein OS=Chicken stool-associated gemycircularvirus OX=1930298 PE=4 SV=1
MM1 pKa = 7.84GYY3 pKa = 10.16FEE5 pKa = 5.2EE6 pKa = 4.69NGYY9 pKa = 10.11SLSTGLHH16 pKa = 5.85HH17 pKa = 7.91SEE19 pKa = 3.51MAYY22 pKa = 10.37SRR24 pKa = 11.84FRR26 pKa = 11.84RR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84SFRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84PARR37 pKa = 11.84TLRR40 pKa = 11.84RR41 pKa = 11.84SQHH44 pKa = 4.73KK45 pKa = 8.15RR46 pKa = 11.84TVRR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84FVRR55 pKa = 11.84RR56 pKa = 11.84PRR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84MTSRR64 pKa = 11.84RR65 pKa = 11.84VRR67 pKa = 11.84NIASRR72 pKa = 11.84KK73 pKa = 9.04KK74 pKa = 10.06HH75 pKa = 5.38DD76 pKa = 3.74TQLGADD82 pKa = 3.93SNADD86 pKa = 3.42DD87 pKa = 4.64SSNPVQLHH95 pKa = 6.38AGNNYY100 pKa = 8.68YY101 pKa = 10.68LWAPSYY107 pKa = 10.85LEE109 pKa = 3.86QHH111 pKa = 6.2EE112 pKa = 4.22EE113 pKa = 3.96SYY115 pKa = 11.36DD116 pKa = 3.7YY117 pKa = 11.45VRR119 pKa = 11.84NNQNVYY125 pKa = 10.06FRR127 pKa = 11.84GVQDD131 pKa = 3.94RR132 pKa = 11.84VFLSAAFAFTWRR144 pKa = 11.84RR145 pKa = 11.84VCFFSYY151 pKa = 10.5EE152 pKa = 3.98QFIPALPFFVEE163 pKa = 5.26APNEE167 pKa = 4.16DD168 pKa = 4.02DD169 pKa = 3.73PQIMRR174 pKa = 11.84RR175 pKa = 11.84PLRR178 pKa = 11.84EE179 pKa = 3.91ITPKK183 pKa = 9.38TASEE187 pKa = 4.2FFSYY191 pKa = 9.82AWKK194 pKa = 8.9GTVGVDD200 pKa = 3.83FSEE203 pKa = 4.13NTRR206 pKa = 11.84WNAPLDD212 pKa = 4.29DD213 pKa = 4.5KK214 pKa = 11.5LLTIVYY220 pKa = 9.6DD221 pKa = 3.84RR222 pKa = 11.84SVTINPNYY230 pKa = 9.75AAPAGATFGKK240 pKa = 10.8SMTRR244 pKa = 11.84KK245 pKa = 8.12MWHH248 pKa = 6.45PVNKK252 pKa = 9.83TMMYY256 pKa = 10.12SDD258 pKa = 4.9KK259 pKa = 11.03EE260 pKa = 4.23NGSTPSSTGWTSMCPNSPGNFYY282 pKa = 10.64ILDD285 pKa = 3.84IFSTGQDD292 pKa = 3.42LPGDD296 pKa = 3.67LTGVGEE302 pKa = 4.68FGSEE306 pKa = 3.61ATVYY310 pKa = 8.37WHH312 pKa = 6.95EE313 pKa = 4.1NN314 pKa = 3.13

Molecular weight: 36.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

518

204

314

259.0

29.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.178 ± 0.176

0.579 ± 0.053

5.212 ± 0.107

5.792 ± 0.637

5.792 ± 0.529

7.529 ± 1.645

2.896 ± 0.319

4.247 ± 1.556

3.282 ± 0.089

5.792 ± 0.637

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.124 ± 0.68

4.826 ± 1.122

5.212 ± 0.476

3.089 ± 0.204

11.197 ± 0.246

8.687 ± 0.211

5.985 ± 0.644

4.826 ± 0.538

1.931 ± 0.274

4.826 ± 0.247
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski