Gordonia phage CarolAnn

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fairfaxidumvirus; unclassified Fairfaxidumvirus

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 80 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B3AZ59|A0A1B3AZ59_9CAUD Uncharacterized protein OS=Gordonia phage CarolAnn OX=1887644 GN=43 PE=4 SV=1
MM1 pKa = 7.46ANDD4 pKa = 4.61TIFEE8 pKa = 4.28LPEE11 pKa = 4.65IPGVTFTASYY21 pKa = 10.84GSGGEE26 pKa = 4.12TGLPSNWIRR35 pKa = 11.84IVGTVEE41 pKa = 3.86NPWYY45 pKa = 10.31DD46 pKa = 3.26PTYY49 pKa = 11.17NYY51 pKa = 11.17GLDD54 pKa = 4.0PNGHH58 pKa = 5.86TEE60 pKa = 4.02MTDD63 pKa = 2.47PWKK66 pKa = 10.71RR67 pKa = 11.84HH68 pKa = 4.03TQFPTVLGPMGFEE81 pKa = 4.55GPSIGLPTDD90 pKa = 3.96PPPPPVEE97 pKa = 4.3PEE99 pKa = 3.82PTPDD103 pKa = 3.75LEE105 pKa = 4.4EE106 pKa = 4.25PTVGG110 pKa = 4.31

Molecular weight: 11.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B3AZ60|A0A1B3AZ60_9CAUD Portal protein OS=Gordonia phage CarolAnn OX=1887644 GN=3 PE=4 SV=1
MM1 pKa = 6.9IRR3 pKa = 11.84ARR5 pKa = 11.84KK6 pKa = 9.97RR7 pKa = 11.84IDD9 pKa = 3.31QFVLSLSFGLARR21 pKa = 11.84PIDD24 pKa = 3.83DD25 pKa = 4.17RR26 pKa = 11.84VTKK29 pKa = 10.12TRR31 pKa = 11.84FFFAFVLPAFVCGIAIGARR50 pKa = 11.84LAVPAAQFLSGMSIVSGVLLALCTLSYY77 pKa = 11.01TRR79 pKa = 11.84VKK81 pKa = 10.84DD82 pKa = 3.49LAGEE86 pKa = 4.33KK87 pKa = 9.61GWQGADD93 pKa = 3.3PMVPAYY99 pKa = 10.32RR100 pKa = 11.84FARR103 pKa = 11.84GALTATYY110 pKa = 10.33ISLTATALLIAQLFTGEE127 pKa = 4.07GRR129 pKa = 11.84PTEE132 pKa = 4.25ALSGIALGLVVHH144 pKa = 6.52LGVRR148 pKa = 11.84IWTMLSAIRR157 pKa = 11.84FQVDD161 pKa = 2.97ATAGQRR167 pKa = 11.84ASGPPKK173 pKa = 10.07LRR175 pKa = 11.84QVSS178 pKa = 3.44

Molecular weight: 19.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

80

0

80

17543

37

1863

219.3

23.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.589 ± 0.433

0.838 ± 0.131

6.937 ± 0.312

5.649 ± 0.352

2.822 ± 0.145

8.402 ± 0.361

2.206 ± 0.164

4.452 ± 0.149

3.238 ± 0.227

7.712 ± 0.26

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.143 ± 0.167

2.799 ± 0.156

5.837 ± 0.287

3.426 ± 0.144

7.684 ± 0.409

5.284 ± 0.176

6.926 ± 0.249

7.918 ± 0.267

2.018 ± 0.112

2.121 ± 0.151
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski