Amino acid dipepetide frequency for Lemur associated porprismacovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.0AlaAla: 0.0 ± 0.0
3.252AlaCys: 3.252 ± 1.998
11.382AlaAsp: 11.382 ± 2.107
0.0AlaGlu: 0.0 ± 0.0
1.626AlaPhe: 1.626 ± 0.999
3.252AlaGly: 3.252 ± 1.998
0.0AlaHis: 0.0 ± 0.0
8.13AlaIle: 8.13 ± 2.333
1.626AlaLys: 1.626 ± 0.999
1.626AlaLeu: 1.626 ± 0.999
4.878AlaMet: 4.878 ± 0.554
1.626AlaAsn: 1.626 ± 0.999
3.252AlaPro: 3.252 ± 1.998
3.252AlaGln: 3.252 ± 0.445
3.252AlaArg: 3.252 ± 2.887
13.008AlaSer: 13.008 ± 0.663
9.756AlaThr: 9.756 ± 3.777
6.504AlaVal: 6.504 ± 3.996
1.626AlaTrp: 1.626 ± 1.444
3.252AlaTyr: 3.252 ± 0.445
0.0AlaXaa: 0.0 ± 0.0
Cys
1.626CysAla: 1.626 ± 0.999
0.0CysCys: 0.0 ± 0.0
1.626CysAsp: 1.626 ± 0.999
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.626CysGly: 1.626 ± 1.444
0.0CysHis: 0.0 ± 0.0
1.626CysIle: 1.626 ± 0.999
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.626CysAsn: 1.626 ± 1.444
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.252AspAla: 3.252 ± 1.998
0.0AspCys: 0.0 ± 0.0
0.0AspAsp: 0.0 ± 0.0
0.0AspGlu: 0.0 ± 0.0
0.0AspPhe: 0.0 ± 0.0
3.252AspGly: 3.252 ± 0.445
0.0AspHis: 0.0 ± 0.0
8.13AspIle: 8.13 ± 0.109
0.0AspLys: 0.0 ± 0.0
3.252AspLeu: 3.252 ± 1.998
4.878AspMet: 4.878 ± 0.554
1.626AspAsn: 1.626 ± 1.444
9.756AspPro: 9.756 ± 1.108
1.626AspGln: 1.626 ± 0.999
4.878AspArg: 4.878 ± 4.331
3.252AspSer: 3.252 ± 0.445
4.878AspThr: 4.878 ± 2.997
1.626AspVal: 1.626 ± 1.444
1.626AspTrp: 1.626 ± 1.444
1.626AspTyr: 1.626 ± 0.999
0.0AspXaa: 0.0 ± 0.0
Glu
6.504GluAla: 6.504 ± 3.332
0.0GluCys: 0.0 ± 0.0
0.0GluAsp: 0.0 ± 0.0
0.0GluGlu: 0.0 ± 0.0
1.626GluPhe: 1.626 ± 0.999
6.504GluGly: 6.504 ± 0.89
1.626GluHis: 1.626 ± 1.444
1.626GluIle: 1.626 ± 1.444
3.252GluLys: 3.252 ± 2.887
0.0GluLeu: 0.0 ± 0.0
0.0GluMet: 0.0 ± 0.0
6.504GluAsn: 6.504 ± 3.332
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
0.0GluArg: 0.0 ± 0.0
3.252GluSer: 3.252 ± 0.445
4.878GluThr: 4.878 ± 0.554
1.626GluVal: 1.626 ± 0.999
1.626GluTrp: 1.626 ± 1.444
1.626GluTyr: 1.626 ± 1.444
0.0GluXaa: 0.0 ± 0.0
Phe
1.626PheAla: 1.626 ± 0.999
0.0PheCys: 0.0 ± 0.0
1.626PheAsp: 1.626 ± 1.444
0.0PheGlu: 0.0 ± 0.0
3.252PhePhe: 3.252 ± 0.445
1.626PheGly: 1.626 ± 1.444
0.0PheHis: 0.0 ± 0.0
3.252PheIle: 3.252 ± 0.445
3.252PheLys: 3.252 ± 1.998
1.626PheLeu: 1.626 ± 1.444
0.0PheMet: 0.0 ± 0.0
4.878PheAsn: 4.878 ± 0.554
0.0PhePro: 0.0 ± 0.0
1.626PheGln: 1.626 ± 0.999
4.878PheArg: 4.878 ± 1.889
3.252PheSer: 3.252 ± 1.998
1.626PheThr: 1.626 ± 0.999
1.626PheVal: 1.626 ± 0.999
0.0PheTrp: 0.0 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
9.756GlyAla: 9.756 ± 1.108
0.0GlyCys: 0.0 ± 0.0
3.252GlyAsp: 3.252 ± 1.998
1.626GlyGlu: 1.626 ± 0.999
3.252GlyPhe: 3.252 ± 2.887
0.0GlyGly: 0.0 ± 0.0
1.626GlyHis: 1.626 ± 1.444
6.504GlyIle: 6.504 ± 0.89
8.13GlyLys: 8.13 ± 7.219
6.504GlyLeu: 6.504 ± 1.553
1.626GlyMet: 1.626 ± 0.771
3.252GlyAsn: 3.252 ± 2.887
1.626GlyPro: 1.626 ± 0.999
1.626GlyGln: 1.626 ± 0.999
4.878GlyArg: 4.878 ± 2.997
3.252GlySer: 3.252 ± 1.998
6.504GlyThr: 6.504 ± 3.996
9.756GlyVal: 9.756 ± 3.551
4.878GlyTrp: 4.878 ± 0.554
3.252GlyTyr: 3.252 ± 2.887
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
1.626HisLys: 1.626 ± 1.444
1.626HisLeu: 1.626 ± 1.444
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
1.626HisThr: 1.626 ± 0.999
0.0HisVal: 0.0 ± 0.0
1.626HisTrp: 1.626 ± 1.444
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
6.504IleAla: 6.504 ± 0.89
0.0IleCys: 0.0 ± 0.0
1.626IleAsp: 1.626 ± 1.444
1.626IleGlu: 1.626 ± 1.444
0.0IlePhe: 0.0 ± 0.0
3.252IleGly: 3.252 ± 0.445
1.626IleHis: 1.626 ± 0.999
3.252IleIle: 3.252 ± 0.445
3.252IleLys: 3.252 ± 2.887
1.626IleLeu: 1.626 ± 0.999
4.878IleMet: 4.878 ± 0.554
3.252IleAsn: 3.252 ± 1.998
1.626IlePro: 1.626 ± 1.444
1.626IleGln: 1.626 ± 0.999
3.252IleArg: 3.252 ± 0.445
3.252IleSer: 3.252 ± 1.998
4.878IleThr: 4.878 ± 1.889
13.008IleVal: 13.008 ± 4.222
0.0IleTrp: 0.0 ± 0.0
1.626IleTyr: 1.626 ± 0.999
0.0IleXaa: 0.0 ± 0.0
Lys
6.504LysAla: 6.504 ± 1.553
1.626LysCys: 1.626 ± 0.999
1.626LysAsp: 1.626 ± 1.444
1.626LysGlu: 1.626 ± 1.444
6.504LysPhe: 6.504 ± 0.89
11.382LysGly: 11.382 ± 5.221
0.0LysHis: 0.0 ± 0.0
3.252LysIle: 3.252 ± 1.998
1.626LysLys: 1.626 ± 0.999
3.252LysLeu: 3.252 ± 0.445
3.252LysMet: 3.252 ± 0.445
1.626LysAsn: 1.626 ± 1.444
1.626LysPro: 1.626 ± 1.444
0.0LysGln: 0.0 ± 0.0
0.0LysArg: 0.0 ± 0.0
1.626LysSer: 1.626 ± 1.444
3.252LysThr: 3.252 ± 0.445
1.626LysVal: 1.626 ± 0.999
3.252LysTrp: 3.252 ± 2.887
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
9.756LeuAla: 9.756 ± 1.334
0.0LeuCys: 0.0 ± 0.0
1.626LeuAsp: 1.626 ± 0.999
3.252LeuGlu: 3.252 ± 0.445
1.626LeuPhe: 1.626 ± 0.999
1.626LeuGly: 1.626 ± 0.999
0.0LeuHis: 0.0 ± 0.0
0.0LeuIle: 0.0 ± 0.0
0.0LeuLys: 0.0 ± 0.0
3.252LeuLeu: 3.252 ± 1.998
0.0LeuMet: 0.0 ± 0.0
4.878LeuAsn: 4.878 ± 2.997
1.626LeuPro: 1.626 ± 0.999
4.878LeuGln: 4.878 ± 2.997
3.252LeuArg: 3.252 ± 0.445
6.504LeuSer: 6.504 ± 1.553
3.252LeuThr: 3.252 ± 0.445
8.13LeuVal: 8.13 ± 2.333
0.0LeuTrp: 0.0 ± 0.0
4.878LeuTyr: 4.878 ± 2.997
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
3.252MetGlu: 3.252 ± 0.445
1.626MetPhe: 1.626 ± 0.999
1.626MetGly: 1.626 ± 0.999
0.0MetHis: 0.0 ± 0.0
4.878MetIle: 4.878 ± 4.331
1.626MetLys: 1.626 ± 0.999
3.252MetLeu: 3.252 ± 0.445
0.0MetMet: 0.0 ± 0.0
1.626MetAsn: 1.626 ± 0.999
6.504MetPro: 6.504 ± 1.553
0.0MetGln: 0.0 ± 0.0
4.878MetArg: 4.878 ± 0.554
1.626MetSer: 1.626 ± 0.999
4.878MetThr: 4.878 ± 0.554
3.252MetVal: 3.252 ± 0.445
0.0MetTrp: 0.0 ± 0.0
1.626MetTyr: 1.626 ± 1.444
0.0MetXaa: 0.0 ± 0.0
Asn
1.626AsnAla: 1.626 ± 1.444
0.0AsnCys: 0.0 ± 0.0
8.13AsnAsp: 8.13 ± 0.109
1.626AsnGlu: 1.626 ± 1.444
0.0AsnPhe: 0.0 ± 0.0
8.13AsnGly: 8.13 ± 2.333
0.0AsnHis: 0.0 ± 0.0
1.626AsnIle: 1.626 ± 0.999
4.878AsnLys: 4.878 ± 2.997
1.626AsnLeu: 1.626 ± 0.999
1.626AsnMet: 1.626 ± 1.444
1.626AsnAsn: 1.626 ± 0.999
3.252AsnPro: 3.252 ± 0.445
3.252AsnGln: 3.252 ± 1.998
1.626AsnArg: 1.626 ± 0.999
3.252AsnSer: 3.252 ± 0.445
3.252AsnThr: 3.252 ± 1.998
6.504AsnVal: 6.504 ± 0.89
0.0AsnTrp: 0.0 ± 0.0
3.252AsnTyr: 3.252 ± 1.998
0.0AsnXaa: 0.0 ± 0.0
Pro
6.504ProAla: 6.504 ± 3.996
0.0ProCys: 0.0 ± 0.0
0.0ProAsp: 0.0 ± 0.0
3.252ProGlu: 3.252 ± 2.887
0.0ProPhe: 0.0 ± 0.0
1.626ProGly: 1.626 ± 0.999
0.0ProHis: 0.0 ± 0.0
1.626ProIle: 1.626 ± 0.999
3.252ProLys: 3.252 ± 0.445
8.13ProLeu: 8.13 ± 2.552
0.0ProMet: 0.0 ± 0.0
0.0ProAsn: 0.0 ± 0.0
6.504ProPro: 6.504 ± 0.89
4.878ProGln: 4.878 ± 0.554
6.504ProArg: 6.504 ± 5.775
3.252ProSer: 3.252 ± 1.998
1.626ProThr: 1.626 ± 0.999
1.626ProVal: 1.626 ± 0.999
1.626ProTrp: 1.626 ± 0.999
3.252ProTyr: 3.252 ± 0.445
0.0ProXaa: 0.0 ± 0.0
Gln
4.878GlnAla: 4.878 ± 0.554
0.0GlnCys: 0.0 ± 0.0
1.626GlnAsp: 1.626 ± 0.999
1.626GlnGlu: 1.626 ± 1.444
3.252GlnPhe: 3.252 ± 1.998
3.252GlnGly: 3.252 ± 0.445
0.0GlnHis: 0.0 ± 0.0
4.878GlnIle: 4.878 ± 0.554
0.0GlnLys: 0.0 ± 0.0
0.0GlnLeu: 0.0 ± 0.0
1.626GlnMet: 1.626 ± 0.999
0.0GlnAsn: 0.0 ± 0.0
0.0GlnPro: 0.0 ± 0.0
0.0GlnGln: 0.0 ± 0.0
0.0GlnArg: 0.0 ± 0.0
3.252GlnSer: 3.252 ± 1.998
0.0GlnThr: 0.0 ± 0.0
4.878GlnVal: 4.878 ± 0.554
1.626GlnTrp: 1.626 ± 1.444
1.626GlnTyr: 1.626 ± 0.999
0.0GlnXaa: 0.0 ± 0.0
Arg
4.878ArgAla: 4.878 ± 1.889
1.626ArgCys: 1.626 ± 1.444
0.0ArgAsp: 0.0 ± 0.0
3.252ArgGlu: 3.252 ± 2.887
6.504ArgPhe: 6.504 ± 3.332
1.626ArgGly: 1.626 ± 0.999
0.0ArgHis: 0.0 ± 0.0
0.0ArgIle: 0.0 ± 0.0
4.878ArgLys: 4.878 ± 1.889
1.626ArgLeu: 1.626 ± 0.999
3.252ArgMet: 3.252 ± 1.998
1.626ArgAsn: 1.626 ± 0.999
3.252ArgPro: 3.252 ± 0.445
4.878ArgGln: 4.878 ± 4.331
0.0ArgArg: 0.0 ± 0.0
3.252ArgSer: 3.252 ± 2.887
0.0ArgThr: 0.0 ± 0.0
4.878ArgVal: 4.878 ± 2.997
1.626ArgTrp: 1.626 ± 1.444
1.626ArgTyr: 1.626 ± 1.444
0.0ArgXaa: 0.0 ± 0.0
Ser
3.252SerAla: 3.252 ± 2.887
0.0SerCys: 0.0 ± 0.0
3.252SerAsp: 3.252 ± 0.445
3.252SerGlu: 3.252 ± 1.998
1.626SerPhe: 1.626 ± 0.999
9.756SerGly: 9.756 ± 1.108
0.0SerHis: 0.0 ± 0.0
0.0SerIle: 0.0 ± 0.0
4.878SerLys: 4.878 ± 0.554
4.878SerLeu: 4.878 ± 2.997
6.504SerMet: 6.504 ± 0.89
6.504SerAsn: 6.504 ± 3.996
1.626SerPro: 1.626 ± 1.444
0.0SerGln: 0.0 ± 0.0
0.0SerArg: 0.0 ± 0.0
4.878SerSer: 4.878 ± 2.997
6.504SerThr: 6.504 ± 3.996
4.878SerVal: 4.878 ± 0.554
4.878SerTrp: 4.878 ± 1.889
3.252SerTyr: 3.252 ± 0.445
0.0SerXaa: 0.0 ± 0.0
Thr
3.252ThrAla: 3.252 ± 1.998
0.0ThrCys: 0.0 ± 0.0
4.878ThrAsp: 4.878 ± 2.997
0.0ThrGlu: 0.0 ± 0.0
0.0ThrPhe: 0.0 ± 0.0
8.13ThrGly: 8.13 ± 4.994
0.0ThrHis: 0.0 ± 0.0
1.626ThrIle: 1.626 ± 0.999
3.252ThrLys: 3.252 ± 1.998
4.878ThrLeu: 4.878 ± 0.554
4.878ThrMet: 4.878 ± 0.554
8.13ThrAsn: 8.13 ± 2.333
4.878ThrPro: 4.878 ± 0.554
1.626ThrGln: 1.626 ± 0.999
1.626ThrArg: 1.626 ± 1.444
3.252ThrSer: 3.252 ± 1.998
0.0ThrThr: 0.0 ± 0.0
6.504ThrVal: 6.504 ± 3.332
1.626ThrTrp: 1.626 ± 0.999
3.252ThrTyr: 3.252 ± 1.998
0.0ThrXaa: 0.0 ± 0.0
Val
9.756ValAla: 9.756 ± 3.551
1.626ValCys: 1.626 ± 1.444
6.504ValAsp: 6.504 ± 0.89
11.382ValGlu: 11.382 ± 0.336
3.252ValPhe: 3.252 ± 1.998
9.756ValGly: 9.756 ± 1.108
1.626ValHis: 1.626 ± 1.444
4.878ValIle: 4.878 ± 4.331
3.252ValLys: 3.252 ± 2.887
6.504ValLeu: 6.504 ± 1.553
0.0ValMet: 0.0 ± 0.0
4.878ValAsn: 4.878 ± 2.997
6.504ValPro: 6.504 ± 1.553
1.626ValGln: 1.626 ± 0.999
1.626ValArg: 1.626 ± 1.444
4.878ValSer: 4.878 ± 0.554
1.626ValThr: 1.626 ± 0.999
6.504ValVal: 6.504 ± 0.89
1.626ValTrp: 1.626 ± 1.444
1.626ValTyr: 1.626 ± 1.444
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
3.252TrpAsp: 3.252 ± 2.887
1.626TrpGlu: 1.626 ± 1.444
0.0TrpPhe: 0.0 ± 0.0
1.626TrpGly: 1.626 ± 0.999
0.0TrpHis: 0.0 ± 0.0
3.252TrpIle: 3.252 ± 0.445
1.626TrpLys: 1.626 ± 1.444
1.626TrpLeu: 1.626 ± 1.444
0.0TrpMet: 0.0 ± 0.939
1.626TrpAsn: 1.626 ± 0.999
0.0TrpPro: 0.0 ± 0.0
1.626TrpGln: 1.626 ± 1.444
4.878TrpArg: 4.878 ± 1.889
0.0TrpSer: 0.0 ± 0.0
1.626TrpThr: 1.626 ± 0.999
1.626TrpVal: 1.626 ± 1.444
0.0TrpTrp: 0.0 ± 0.0
1.626TrpTyr: 1.626 ± 1.444
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.626TyrAla: 1.626 ± 0.999
0.0TyrCys: 0.0 ± 0.0
3.252TyrAsp: 3.252 ± 0.445
3.252TyrGlu: 3.252 ± 2.887
0.0TyrPhe: 0.0 ± 0.0
3.252TyrGly: 3.252 ± 1.998
0.0TyrHis: 0.0 ± 0.0
1.626TyrIle: 1.626 ± 0.999
3.252TyrLys: 3.252 ± 0.445
3.252TyrLeu: 3.252 ± 0.445
1.626TyrMet: 1.626 ± 1.444
0.0TyrAsn: 0.0 ± 0.0
1.626TyrPro: 1.626 ± 0.999
0.0TyrGln: 0.0 ± 0.0
3.252TyrArg: 3.252 ± 1.998
4.878TyrSer: 4.878 ± 1.889
1.626TyrThr: 1.626 ± 0.999
4.878TyrVal: 4.878 ± 1.889
0.0TyrTrp: 0.0 ± 0.0
6.504TyrTyr: 6.504 ± 1.553
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (616 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski