Amino acid dipepetide frequency for Blueberry scorch virus (BBScV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.069AlaAla: 4.069 ± 0.0
2.035AlaCys: 2.035 ± 0.0
3.052AlaAsp: 3.052 ± 0.0
3.052AlaGlu: 3.052 ± 0.0
2.543AlaPhe: 2.543 ± 0.0
5.595AlaGly: 5.595 ± 0.0
1.526AlaHis: 1.526 ± 0.0
2.543AlaIle: 2.543 ± 0.0
7.63AlaLys: 7.63 ± 0.0
7.63AlaLeu: 7.63 ± 0.0
1.017AlaMet: 1.017 ± 0.0
2.543AlaAsn: 2.543 ± 0.0
3.561AlaPro: 3.561 ± 0.0
3.561AlaGln: 3.561 ± 0.0
2.543AlaArg: 2.543 ± 0.0
4.069AlaSer: 4.069 ± 0.0
2.035AlaThr: 2.035 ± 0.0
5.086AlaVal: 5.086 ± 0.0
1.017AlaTrp: 1.017 ± 0.0
2.035AlaTyr: 2.035 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
2.543CysAla: 2.543 ± 0.0
1.017CysCys: 1.017 ± 0.0
1.526CysAsp: 1.526 ± 0.0
1.017CysGlu: 1.017 ± 0.0
2.543CysPhe: 2.543 ± 0.0
3.052CysGly: 3.052 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.017CysIle: 1.017 ± 0.0
1.526CysLys: 1.526 ± 0.0
4.578CysLeu: 4.578 ± 0.0
1.526CysMet: 1.526 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.017CysPro: 1.017 ± 0.0
0.509CysGln: 0.509 ± 0.0
3.052CysArg: 3.052 ± 0.0
2.543CysSer: 2.543 ± 0.0
1.017CysThr: 1.017 ± 0.0
3.561CysVal: 3.561 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.017CysTyr: 1.017 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.561AspAla: 3.561 ± 0.0
2.035AspCys: 2.035 ± 0.0
1.526AspAsp: 1.526 ± 0.0
6.104AspGlu: 6.104 ± 0.0
3.561AspPhe: 3.561 ± 0.0
4.578AspGly: 4.578 ± 0.0
1.017AspHis: 1.017 ± 0.0
1.526AspIle: 1.526 ± 0.0
2.543AspLys: 2.543 ± 0.0
6.104AspLeu: 6.104 ± 0.0
1.526AspMet: 1.526 ± 0.0
2.543AspAsn: 2.543 ± 0.0
2.035AspPro: 2.035 ± 0.0
1.017AspGln: 1.017 ± 0.0
2.035AspArg: 2.035 ± 0.0
1.526AspSer: 1.526 ± 0.0
2.035AspThr: 2.035 ± 0.0
4.578AspVal: 4.578 ± 0.0
0.509AspTrp: 0.509 ± 0.0
2.035AspTyr: 2.035 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.578GluAla: 4.578 ± 0.0
1.526GluCys: 1.526 ± 0.0
6.104GluAsp: 6.104 ± 0.0
8.138GluGlu: 8.138 ± 0.0
2.035GluPhe: 2.035 ± 0.0
5.086GluGly: 5.086 ± 0.0
1.017GluHis: 1.017 ± 0.0
3.561GluIle: 3.561 ± 0.0
4.578GluLys: 4.578 ± 0.0
5.595GluLeu: 5.595 ± 0.0
0.509GluMet: 0.509 ± 0.0
1.017GluAsn: 1.017 ± 0.0
4.069GluPro: 4.069 ± 0.0
4.069GluGln: 4.069 ± 0.0
4.069GluArg: 4.069 ± 0.0
3.052GluSer: 3.052 ± 0.0
4.069GluThr: 4.069 ± 0.0
5.595GluVal: 5.595 ± 0.0
1.017GluTrp: 1.017 ± 0.0
2.035GluTyr: 2.035 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
4.578PheAla: 4.578 ± 0.0
1.017PheCys: 1.017 ± 0.0
4.069PheAsp: 4.069 ± 0.0
6.612PheGlu: 6.612 ± 0.0
1.526PhePhe: 1.526 ± 0.0
3.561PheGly: 3.561 ± 0.0
0.509PheHis: 0.509 ± 0.0
1.526PheIle: 1.526 ± 0.0
3.052PheLys: 3.052 ± 0.0
5.086PheLeu: 5.086 ± 0.0
2.035PheMet: 2.035 ± 0.0
2.035PheAsn: 2.035 ± 0.0
0.509PhePro: 0.509 ± 0.0
3.052PheGln: 3.052 ± 0.0
3.561PheArg: 3.561 ± 0.0
4.069PheSer: 4.069 ± 0.0
2.035PheThr: 2.035 ± 0.0
3.052PheVal: 3.052 ± 0.0
0.509PheTrp: 0.509 ± 0.0
3.561PheTyr: 3.561 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.578GlyAla: 4.578 ± 0.0
1.526GlyCys: 1.526 ± 0.0
2.543GlyAsp: 2.543 ± 0.0
3.052GlyGlu: 3.052 ± 0.0
3.561GlyPhe: 3.561 ± 0.0
1.526GlyGly: 1.526 ± 0.0
0.509GlyHis: 0.509 ± 0.0
4.069GlyIle: 4.069 ± 0.0
4.578GlyLys: 4.578 ± 0.0
4.578GlyLeu: 4.578 ± 0.0
0.509GlyMet: 0.509 ± 0.0
4.578GlyAsn: 4.578 ± 0.0
2.035GlyPro: 2.035 ± 0.0
0.509GlyGln: 0.509 ± 0.0
6.104GlyArg: 6.104 ± 0.0
4.578GlySer: 4.578 ± 0.0
4.578GlyThr: 4.578 ± 0.0
6.612GlyVal: 6.612 ± 0.0
1.017GlyTrp: 1.017 ± 0.0
1.526GlyTyr: 1.526 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.526HisAla: 1.526 ± 0.0
0.0HisCys: 0.0 ± 0.0
2.035HisAsp: 2.035 ± 0.0
1.017HisGlu: 1.017 ± 0.0
0.509HisPhe: 0.509 ± 0.0
0.0HisGly: 0.0 ± 0.0
0.509HisHis: 0.509 ± 0.0
0.0HisIle: 0.0 ± 0.0
2.035HisLys: 2.035 ± 0.0
5.595HisLeu: 5.595 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
0.509HisPro: 0.509 ± 0.0
0.0HisGln: 0.0 ± 0.0
1.526HisArg: 1.526 ± 0.0
4.069HisSer: 4.069 ± 0.0
1.526HisThr: 1.526 ± 0.0
0.509HisVal: 0.509 ± 0.0
0.0HisTrp: 0.0 ± 0.0
1.526HisTyr: 1.526 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.543IleAla: 2.543 ± 0.0
2.035IleCys: 2.035 ± 0.0
3.052IleAsp: 3.052 ± 0.0
5.595IleGlu: 5.595 ± 0.0
2.543IlePhe: 2.543 ± 0.0
2.543IleGly: 2.543 ± 0.0
0.509IleHis: 0.509 ± 0.0
2.035IleIle: 2.035 ± 0.0
3.561IleLys: 3.561 ± 0.0
3.561IleLeu: 3.561 ± 0.0
1.526IleMet: 1.526 ± 0.0
2.035IleAsn: 2.035 ± 0.0
1.017IlePro: 1.017 ± 0.0
1.017IleGln: 1.017 ± 0.0
1.526IleArg: 1.526 ± 0.0
3.052IleSer: 3.052 ± 0.0
2.035IleThr: 2.035 ± 0.0
5.086IleVal: 5.086 ± 0.0
0.0IleTrp: 0.0 ± 0.0
2.543IleTyr: 2.543 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.069LysAla: 4.069 ± 0.0
0.509LysCys: 0.509 ± 0.0
3.052LysAsp: 3.052 ± 0.0
5.595LysGlu: 5.595 ± 0.0
3.561LysPhe: 3.561 ± 0.0
5.086LysGly: 5.086 ± 0.0
4.069LysHis: 4.069 ± 0.0
4.578LysIle: 4.578 ± 0.0
5.086LysLys: 5.086 ± 0.0
8.138LysLeu: 8.138 ± 0.0
2.035LysMet: 2.035 ± 0.0
1.526LysAsn: 1.526 ± 0.0
2.035LysPro: 2.035 ± 0.0
2.035LysGln: 2.035 ± 0.0
4.069LysArg: 4.069 ± 0.0
4.578LysSer: 4.578 ± 0.0
2.543LysThr: 2.543 ± 0.0
1.017LysVal: 1.017 ± 0.0
1.017LysTrp: 1.017 ± 0.0
1.526LysTyr: 1.526 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.612LeuAla: 6.612 ± 0.0
5.086LeuCys: 5.086 ± 0.0
2.543LeuAsp: 2.543 ± 0.0
6.612LeuGlu: 6.612 ± 0.0
7.121LeuPhe: 7.121 ± 0.0
7.121LeuGly: 7.121 ± 0.0
2.543LeuHis: 2.543 ± 0.0
5.086LeuIle: 5.086 ± 0.0
8.647LeuLys: 8.647 ± 0.0
8.647LeuLeu: 8.647 ± 0.0
2.035LeuMet: 2.035 ± 0.0
4.069LeuAsn: 4.069 ± 0.0
4.069LeuPro: 4.069 ± 0.0
5.086LeuGln: 5.086 ± 0.0
7.121LeuArg: 7.121 ± 0.0
6.104LeuSer: 6.104 ± 0.0
3.561LeuThr: 3.561 ± 0.0
4.069LeuVal: 4.069 ± 0.0
0.509LeuTrp: 0.509 ± 0.0
2.543LeuTyr: 2.543 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.543MetAla: 2.543 ± 0.0
1.526MetCys: 1.526 ± 0.0
2.035MetAsp: 2.035 ± 0.0
1.526MetGlu: 1.526 ± 0.0
0.0MetPhe: 0.0 ± 0.0
3.052MetGly: 3.052 ± 0.0
1.017MetHis: 1.017 ± 0.0
1.017MetIle: 1.017 ± 0.0
1.017MetLys: 1.017 ± 0.0
3.561MetLeu: 3.561 ± 0.0
0.509MetMet: 0.509 ± 0.0
1.017MetAsn: 1.017 ± 0.0
1.526MetPro: 1.526 ± 0.0
0.509MetGln: 0.509 ± 0.0
2.035MetArg: 2.035 ± 0.0
1.526MetSer: 1.526 ± 0.0
1.526MetThr: 1.526 ± 0.0
1.526MetVal: 1.526 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.509MetTyr: 0.509 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.035AsnAla: 2.035 ± 0.0
1.526AsnCys: 1.526 ± 0.0
1.526AsnAsp: 1.526 ± 0.0
1.526AsnGlu: 1.526 ± 0.0
3.052AsnPhe: 3.052 ± 0.0
2.543AsnGly: 2.543 ± 0.0
0.509AsnHis: 0.509 ± 0.0
1.017AsnIle: 1.017 ± 0.0
0.509AsnLys: 0.509 ± 0.0
2.035AsnLeu: 2.035 ± 0.0
1.526AsnMet: 1.526 ± 0.0
0.509AsnAsn: 0.509 ± 0.0
2.035AsnPro: 2.035 ± 0.0
1.017AsnGln: 1.017 ± 0.0
4.069AsnArg: 4.069 ± 0.0
1.526AsnSer: 1.526 ± 0.0
2.035AsnThr: 2.035 ± 0.0
2.543AsnVal: 2.543 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
1.017AsnTyr: 1.017 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.017ProAla: 1.017 ± 0.0
3.052ProCys: 3.052 ± 0.0
2.543ProAsp: 2.543 ± 0.0
2.543ProGlu: 2.543 ± 0.0
2.035ProPhe: 2.035 ± 0.0
2.543ProGly: 2.543 ± 0.0
0.509ProHis: 0.509 ± 0.0
0.509ProIle: 0.509 ± 0.0
2.543ProLys: 2.543 ± 0.0
3.561ProLeu: 3.561 ± 0.0
1.526ProMet: 1.526 ± 0.0
2.543ProAsn: 2.543 ± 0.0
1.526ProPro: 1.526 ± 0.0
1.017ProGln: 1.017 ± 0.0
1.017ProArg: 1.017 ± 0.0
2.543ProSer: 2.543 ± 0.0
3.052ProThr: 3.052 ± 0.0
3.052ProVal: 3.052 ± 0.0
1.017ProTrp: 1.017 ± 0.0
3.052ProTyr: 3.052 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.052GlnAla: 3.052 ± 0.0
1.017GlnCys: 1.017 ± 0.0
1.017GlnAsp: 1.017 ± 0.0
1.526GlnGlu: 1.526 ± 0.0
2.543GlnPhe: 2.543 ± 0.0
1.526GlnGly: 1.526 ± 0.0
1.526GlnHis: 1.526 ± 0.0
2.543GlnIle: 2.543 ± 0.0
0.509GlnLys: 0.509 ± 0.0
3.052GlnLeu: 3.052 ± 0.0
0.509GlnMet: 0.509 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
0.509GlnPro: 0.509 ± 0.0
0.0GlnGln: 0.0 ± 0.0
3.052GlnArg: 3.052 ± 0.0
3.052GlnSer: 3.052 ± 0.0
1.526GlnThr: 1.526 ± 0.0
1.017GlnVal: 1.017 ± 0.0
0.509GlnTrp: 0.509 ± 0.0
1.017GlnTyr: 1.017 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
5.595ArgAla: 5.595 ± 0.0
1.526ArgCys: 1.526 ± 0.0
1.526ArgAsp: 1.526 ± 0.0
3.052ArgGlu: 3.052 ± 0.0
5.086ArgPhe: 5.086 ± 0.0
5.595ArgGly: 5.595 ± 0.0
1.526ArgHis: 1.526 ± 0.0
2.543ArgIle: 2.543 ± 0.0
2.543ArgLys: 2.543 ± 0.0
5.595ArgLeu: 5.595 ± 0.0
2.035ArgMet: 2.035 ± 0.0
1.017ArgAsn: 1.017 ± 0.0
1.526ArgPro: 1.526 ± 0.0
1.526ArgGln: 1.526 ± 0.0
4.069ArgArg: 4.069 ± 0.0
5.595ArgSer: 5.595 ± 0.0
2.543ArgThr: 2.543 ± 0.0
4.069ArgVal: 4.069 ± 0.0
2.543ArgTrp: 2.543 ± 0.0
4.578ArgTyr: 4.578 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.612SerAla: 6.612 ± 0.0
2.035SerCys: 2.035 ± 0.0
4.578SerAsp: 4.578 ± 0.0
3.052SerGlu: 3.052 ± 0.0
4.069SerPhe: 4.069 ± 0.0
3.052SerGly: 3.052 ± 0.0
1.526SerHis: 1.526 ± 0.0
2.543SerIle: 2.543 ± 0.0
7.121SerLys: 7.121 ± 0.0
6.104SerLeu: 6.104 ± 0.0
3.561SerMet: 3.561 ± 0.0
1.017SerAsn: 1.017 ± 0.0
2.543SerPro: 2.543 ± 0.0
2.543SerGln: 2.543 ± 0.0
6.104SerArg: 6.104 ± 0.0
4.069SerSer: 4.069 ± 0.0
2.035SerThr: 2.035 ± 0.0
4.578SerVal: 4.578 ± 0.0
0.0SerTrp: 0.0 ± 0.0
1.017SerTyr: 1.017 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
2.035ThrAla: 2.035 ± 0.0
1.017ThrCys: 1.017 ± 0.0
1.526ThrAsp: 1.526 ± 0.0
3.052ThrGlu: 3.052 ± 0.0
5.595ThrPhe: 5.595 ± 0.0
2.543ThrGly: 2.543 ± 0.0
1.526ThrHis: 1.526 ± 0.0
4.069ThrIle: 4.069 ± 0.0
1.526ThrLys: 1.526 ± 0.0
4.069ThrLeu: 4.069 ± 0.0
3.052ThrMet: 3.052 ± 0.0
1.017ThrAsn: 1.017 ± 0.0
2.035ThrPro: 2.035 ± 0.0
0.0ThrGln: 0.0 ± 0.0
1.526ThrArg: 1.526 ± 0.0
3.052ThrSer: 3.052 ± 0.0
3.052ThrThr: 3.052 ± 0.0
3.561ThrVal: 3.561 ± 0.0
0.509ThrTrp: 0.509 ± 0.0
1.017ThrTyr: 1.017 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.052ValAla: 3.052 ± 0.0
3.052ValCys: 3.052 ± 0.0
5.595ValAsp: 5.595 ± 0.0
5.595ValGlu: 5.595 ± 0.0
2.035ValPhe: 2.035 ± 0.0
2.035ValGly: 2.035 ± 0.0
2.035ValHis: 2.035 ± 0.0
4.069ValIle: 4.069 ± 0.0
4.069ValLys: 4.069 ± 0.0
5.595ValLeu: 5.595 ± 0.0
1.017ValMet: 1.017 ± 0.0
3.052ValAsn: 3.052 ± 0.0
4.069ValPro: 4.069 ± 0.0
1.526ValGln: 1.526 ± 0.0
4.069ValArg: 4.069 ± 0.0
6.612ValSer: 6.612 ± 0.0
2.035ValThr: 2.035 ± 0.0
4.069ValVal: 4.069 ± 0.0
0.509ValTrp: 0.509 ± 0.0
1.526ValTyr: 1.526 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.509TrpAla: 0.509 ± 0.0
1.017TrpCys: 1.017 ± 0.0
0.509TrpAsp: 0.509 ± 0.0
0.509TrpGlu: 0.509 ± 0.0
1.017TrpPhe: 1.017 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.509TrpHis: 0.509 ± 0.0
0.509TrpIle: 0.509 ± 0.0
0.0TrpLys: 0.0 ± 0.0
2.035TrpLeu: 2.035 ± 0.0
0.509TrpMet: 0.509 ± 0.0
0.509TrpAsn: 0.509 ± 0.0
0.509TrpPro: 0.509 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.509TrpArg: 0.509 ± 0.0
1.017TrpSer: 1.017 ± 0.0
0.0TrpThr: 0.0 ± 0.0
1.017TrpVal: 1.017 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.509TrpTyr: 0.509 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.035TyrAla: 2.035 ± 0.0
0.509TyrCys: 0.509 ± 0.0
2.543TyrAsp: 2.543 ± 0.0
2.543TyrGlu: 2.543 ± 0.0
1.017TyrPhe: 1.017 ± 0.0
1.526TyrGly: 1.526 ± 0.0
0.0TyrHis: 0.0 ± 0.0
3.052TyrIle: 3.052 ± 0.0
3.052TyrLys: 3.052 ± 0.0
4.069TyrLeu: 4.069 ± 0.0
0.509TyrMet: 0.509 ± 0.0
1.526TyrAsn: 1.526 ± 0.0
4.069TyrPro: 4.069 ± 0.0
0.509TyrGln: 0.509 ± 0.0
2.035TyrArg: 2.035 ± 0.0
1.526TyrSer: 1.526 ± 0.0
2.543TyrThr: 2.543 ± 0.0
1.017TyrVal: 1.017 ± 0.0
0.509TyrTrp: 0.509 ± 0.0
0.509TyrTyr: 0.509 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (1967 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski