Modestobacter versicolor

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Geodermatophilales; Geodermatophilaceae; Modestobacter

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4717 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A323VIT2|A0A323VIT2_9ACTN ATP-dependent DNA ligase OS=Modestobacter versicolor OX=429133 GN=DMO24_02595 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 10.64LSTTTRR8 pKa = 11.84AAAVSASLAAVLALAACGASNEE30 pKa = 4.52DD31 pKa = 3.64SGSDD35 pKa = 3.33SGSGGGSDD43 pKa = 4.13SAAEE47 pKa = 4.0LSGSLVGAGASSQQSAMEE65 pKa = 4.09AWQAGFEE72 pKa = 4.25GEE74 pKa = 4.28YY75 pKa = 10.32PDD77 pKa = 4.36VQFSYY82 pKa = 11.11APEE85 pKa = 4.41GSGAGRR91 pKa = 11.84EE92 pKa = 3.98QFINGSADD100 pKa = 3.34FAGSDD105 pKa = 3.21AALDD109 pKa = 4.03EE110 pKa = 4.83EE111 pKa = 4.79EE112 pKa = 4.35LTAASEE118 pKa = 4.26RR119 pKa = 11.84CAGGEE124 pKa = 4.12VFEE127 pKa = 4.74LPNYY131 pKa = 9.76ISPIAVAFNLEE142 pKa = 4.38GVDD145 pKa = 4.06EE146 pKa = 5.03LNLTPATIANIFNGTITTWNDD167 pKa = 2.9PAIAADD173 pKa = 3.83NADD176 pKa = 3.42ATLPATAITPVHH188 pKa = 6.42RR189 pKa = 11.84ADD191 pKa = 5.34DD192 pKa = 3.86SGTTEE197 pKa = 3.92NFTDD201 pKa = 4.15YY202 pKa = 10.94LHH204 pKa = 6.51QAAADD209 pKa = 3.52VWTAEE214 pKa = 4.25PDD216 pKa = 4.15GVWPLEE222 pKa = 4.37GGEE225 pKa = 4.36SAQGTSGVIEE235 pKa = 4.25VVTNTVGAITYY246 pKa = 10.35ADD248 pKa = 3.63ASRR251 pKa = 11.84AGDD254 pKa = 3.48LGVANVAVGSDD265 pKa = 4.03FVAPSPEE272 pKa = 3.37AAAAVVEE279 pKa = 4.11NSPAVEE285 pKa = 4.06GRR287 pKa = 11.84GEE289 pKa = 3.91YY290 pKa = 10.87DD291 pKa = 3.38FAIEE295 pKa = 4.24VNRR298 pKa = 11.84LTEE301 pKa = 4.05GTGEE305 pKa = 4.2YY306 pKa = 10.05PVVLVSYY313 pKa = 10.52HH314 pKa = 6.26IGCVEE319 pKa = 4.0YY320 pKa = 10.69DD321 pKa = 3.86DD322 pKa = 5.42QEE324 pKa = 4.23KK325 pKa = 10.99ADD327 pKa = 3.8NVKK330 pKa = 11.06AFMNYY335 pKa = 9.44VISEE339 pKa = 4.37DD340 pKa = 3.85GQATAAEE347 pKa = 4.34NAGNAQISDD356 pKa = 3.95TLRR359 pKa = 11.84EE360 pKa = 4.06QAQGAVDD367 pKa = 5.53AITAAGG373 pKa = 3.34

Molecular weight: 37.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A323V9V3|A0A323V9V3_9ACTN Uncharacterized protein OS=Modestobacter versicolor OX=429133 GN=DMO24_13190 PE=4 SV=1
MM1 pKa = 7.56SILSKK6 pKa = 11.12LMGTAQQTAGRR17 pKa = 11.84GRR19 pKa = 11.84RR20 pKa = 11.84VGGRR24 pKa = 11.84PATGRR29 pKa = 11.84RR30 pKa = 11.84TTGTGRR36 pKa = 11.84TAGGTARR43 pKa = 11.84MARR46 pKa = 11.84GTTSRR51 pKa = 11.84GRR53 pKa = 11.84AGAPAAGGLGKK64 pKa = 10.47LLSSFAKK71 pKa = 10.16RR72 pKa = 11.84RR73 pKa = 3.58

Molecular weight: 7.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4717

0

4717

1332854

24

1538

282.6

29.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.34 ± 0.05

0.65 ± 0.01

6.233 ± 0.031

5.442 ± 0.034

2.596 ± 0.024

9.663 ± 0.03

2.001 ± 0.02

2.698 ± 0.03

1.353 ± 0.025

10.806 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.578 ± 0.013

1.43 ± 0.016

6.154 ± 0.026

2.921 ± 0.021

7.75 ± 0.039

4.916 ± 0.024

6.197 ± 0.029

10.093 ± 0.04

1.459 ± 0.016

1.72 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski