Ulvibacterium marinum

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Ulvibacterium

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5010 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3B0C918|A0A3B0C918_9FLAO M23 family metallopeptidase OS=Ulvibacterium marinum OX=2419782 GN=D7Z94_02785 PE=4 SV=1
MM1 pKa = 7.0YY2 pKa = 9.75RR3 pKa = 11.84YY4 pKa = 10.02DD5 pKa = 5.62AIDD8 pKa = 3.1IMNFKK13 pKa = 9.96VKK15 pKa = 10.52VMFKK19 pKa = 10.46RR20 pKa = 11.84NTWGLIIWSTILLIGLGSCDD40 pKa = 3.5SDD42 pKa = 4.08DD43 pKa = 4.17NAVADD48 pKa = 3.99IPFTADD54 pKa = 2.48VFNSVNGRR62 pKa = 11.84QVAFQGITNNAVSWSWDD79 pKa = 3.35FGDD82 pKa = 4.99GNTSTSQNPVHH93 pKa = 7.09RR94 pKa = 11.84YY95 pKa = 10.09AEE97 pKa = 4.13GGYY100 pKa = 10.03YY101 pKa = 10.11VATLTATDD109 pKa = 3.89EE110 pKa = 4.32NGATLTSEE118 pKa = 4.06VSLALDD124 pKa = 4.02LPPYY128 pKa = 10.48ALLVGNQTEE137 pKa = 4.0EE138 pKa = 5.05GYY140 pKa = 10.52DD141 pKa = 3.31GKK143 pKa = 8.55TWRR146 pKa = 11.84ISSEE150 pKa = 3.72HH151 pKa = 6.14SAFDD155 pKa = 3.46YY156 pKa = 10.88FAFSDD161 pKa = 3.77ADD163 pKa = 3.58LTLFDD168 pKa = 4.72GTPAPLPAGIFGSGLGMGEE187 pKa = 4.02IYY189 pKa = 10.6NDD191 pKa = 3.06EE192 pKa = 3.97FTFYY196 pKa = 11.07FDD198 pKa = 4.42GSYY201 pKa = 11.45KK202 pKa = 9.64MDD204 pKa = 3.74LKK206 pKa = 11.14EE207 pKa = 5.32DD208 pKa = 3.45GTAFSGLVFQFLSFGGANIRR228 pKa = 11.84NLGGEE233 pKa = 4.16DD234 pKa = 4.22FGLCTAAYY242 pKa = 8.15TPAEE246 pKa = 4.3DD247 pKa = 3.38ATFTFTEE254 pKa = 4.44SEE256 pKa = 4.21DD257 pKa = 3.6MTTTSAFGPGGMITYY272 pKa = 9.96EE273 pKa = 4.26GVTTLDD279 pKa = 3.35FSGTEE284 pKa = 4.62FVGFWDD290 pKa = 4.05YY291 pKa = 11.42EE292 pKa = 4.34NKK294 pKa = 10.23VILQDD299 pKa = 3.39ITNSTMRR306 pKa = 11.84LVVFVAASPDD316 pKa = 3.48VPGINTNAIILTFEE330 pKa = 4.33AVDD333 pKa = 3.37

Molecular weight: 36.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3B0CAU5|A0A3B0CAU5_9FLAO Peptidase M14 OS=Ulvibacterium marinum OX=2419782 GN=D7Z94_09135 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.09GRR39 pKa = 11.84KK40 pKa = 7.97KK41 pKa = 10.52LSVSSEE47 pKa = 3.87PRR49 pKa = 11.84HH50 pKa = 5.92KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5010

0

5010

1768237

18

4831

352.9

39.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.358 ± 0.033

0.744 ± 0.011

5.759 ± 0.027

6.691 ± 0.032

5.194 ± 0.025

6.979 ± 0.035

1.942 ± 0.018

7.295 ± 0.029

7.068 ± 0.046

9.628 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.301 ± 0.016

5.549 ± 0.033

3.76 ± 0.022

3.379 ± 0.017

4.013 ± 0.022

6.341 ± 0.025

5.597 ± 0.038

6.194 ± 0.023

1.252 ± 0.013

3.957 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski