Sesamum indicum (Oriental sesame) (Sesamum orientale)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24106 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I9UEB5|A0A6I9UEB5_SESIN HEAT repeat-containing protein 5B OS=Sesamum indicum OX=4182 GN=LOC105177948 PE=4 SV=1
MM1 pKa = 7.16YY2 pKa = 10.63NSTRR6 pKa = 11.84LPNKK10 pKa = 9.45VFLISSFIFEE20 pKa = 4.64EE21 pKa = 4.49LEE23 pKa = 3.84KK24 pKa = 11.13DD25 pKa = 3.66AGGPCLGYY33 pKa = 10.62DD34 pKa = 3.67LQSLEE39 pKa = 4.06NLRR42 pKa = 11.84DD43 pKa = 3.79AEE45 pKa = 4.14EE46 pKa = 4.69LEE48 pKa = 4.15EE49 pKa = 6.23DD50 pKa = 4.48GGGPCLGYY58 pKa = 10.68DD59 pKa = 3.59PQRR62 pKa = 11.84LEE64 pKa = 3.89NLRR67 pKa = 11.84DD68 pKa = 3.75AEE70 pKa = 4.14EE71 pKa = 4.69LEE73 pKa = 4.15EE74 pKa = 6.23DD75 pKa = 4.48GGGPCLGYY83 pKa = 10.64DD84 pKa = 3.67LQSLEE89 pKa = 4.06NLRR92 pKa = 11.84DD93 pKa = 3.79AEE95 pKa = 4.14EE96 pKa = 4.69LEE98 pKa = 4.15EE99 pKa = 6.23DD100 pKa = 4.48GGGPCLGYY108 pKa = 10.67DD109 pKa = 3.64SQRR112 pKa = 11.84LEE114 pKa = 3.97NLRR117 pKa = 11.84DD118 pKa = 3.75AEE120 pKa = 4.25EE121 pKa = 4.78LEE123 pKa = 4.34EE124 pKa = 6.31DD125 pKa = 5.1DD126 pKa = 6.02GGPCLGYY133 pKa = 10.61DD134 pKa = 3.67LQSLEE139 pKa = 4.06NLRR142 pKa = 11.84DD143 pKa = 3.79AEE145 pKa = 4.14EE146 pKa = 4.69LEE148 pKa = 4.06EE149 pKa = 6.23DD150 pKa = 4.85GGGLCLGYY158 pKa = 10.61DD159 pKa = 3.68PQRR162 pKa = 11.84LEE164 pKa = 3.89NLRR167 pKa = 11.84DD168 pKa = 3.75AEE170 pKa = 4.14EE171 pKa = 4.69LEE173 pKa = 4.15EE174 pKa = 6.23DD175 pKa = 4.48GGGPCLGYY183 pKa = 10.68DD184 pKa = 3.59PQRR187 pKa = 11.84LEE189 pKa = 3.89NLRR192 pKa = 11.84DD193 pKa = 3.75AEE195 pKa = 4.25EE196 pKa = 4.78LEE198 pKa = 4.34EE199 pKa = 6.31DD200 pKa = 5.1DD201 pKa = 6.02GGPCLGYY208 pKa = 10.63DD209 pKa = 3.88LQRR212 pKa = 11.84LEE214 pKa = 4.17NLRR217 pKa = 11.84DD218 pKa = 3.75AEE220 pKa = 4.14EE221 pKa = 4.69LEE223 pKa = 4.15EE224 pKa = 6.23DD225 pKa = 4.48GGGPCLGYY233 pKa = 10.67DD234 pKa = 3.64SQRR237 pKa = 11.84LEE239 pKa = 3.97NLRR242 pKa = 11.84DD243 pKa = 3.75AEE245 pKa = 4.25EE246 pKa = 4.78LEE248 pKa = 4.34EE249 pKa = 6.31DD250 pKa = 5.1DD251 pKa = 6.02GGPCLGYY258 pKa = 10.63DD259 pKa = 3.88LQRR262 pKa = 11.84LEE264 pKa = 4.17NLRR267 pKa = 11.84DD268 pKa = 3.75AEE270 pKa = 4.25EE271 pKa = 4.78LEE273 pKa = 4.34EE274 pKa = 6.31DD275 pKa = 5.1DD276 pKa = 6.02GGPCLGYY283 pKa = 10.61DD284 pKa = 3.67LQSLEE289 pKa = 4.06NLRR292 pKa = 11.84DD293 pKa = 3.79AEE295 pKa = 4.14EE296 pKa = 4.69LEE298 pKa = 4.06EE299 pKa = 6.23DD300 pKa = 4.85GGGLCLGYY308 pKa = 10.61DD309 pKa = 3.68PQRR312 pKa = 11.84LEE314 pKa = 3.89NLRR317 pKa = 11.84DD318 pKa = 3.75AEE320 pKa = 4.25EE321 pKa = 4.78LEE323 pKa = 4.34EE324 pKa = 6.31DD325 pKa = 5.1DD326 pKa = 6.02GGPCLGYY333 pKa = 10.63DD334 pKa = 3.88LQRR337 pKa = 11.84LEE339 pKa = 4.17NLRR342 pKa = 11.84DD343 pKa = 3.75AEE345 pKa = 4.14EE346 pKa = 4.69LEE348 pKa = 4.15EE349 pKa = 6.23DD350 pKa = 4.48GGGPCLGYY358 pKa = 10.65DD359 pKa = 3.6PQSLEE364 pKa = 3.8NLRR367 pKa = 11.84DD368 pKa = 3.74AKK370 pKa = 10.66EE371 pKa = 3.99LEE373 pKa = 4.29EE374 pKa = 6.11DD375 pKa = 4.14DD376 pKa = 4.75GGPFLGYY383 pKa = 10.51DD384 pKa = 3.61LQSLEE389 pKa = 3.95NLRR392 pKa = 11.84DD393 pKa = 3.79EE394 pKa = 4.95EE395 pKa = 4.37EE396 pKa = 4.01LAEE399 pKa = 4.63DD400 pKa = 4.82DD401 pKa = 4.46RR402 pKa = 11.84GPSLGYY408 pKa = 10.8DD409 pKa = 3.7FLCPGKK415 pKa = 10.36LLAEE419 pKa = 4.41EE420 pKa = 4.56EE421 pKa = 4.49VQGDD425 pKa = 3.44SGGPCLGYY433 pKa = 10.2IGSTT437 pKa = 3.38

Molecular weight: 48.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I9UHL4|A0A6I9UHL4_SESIN MADS-box protein SOC1 isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105179249 PE=4 SV=1
MM1 pKa = 7.39AAAGSEE7 pKa = 4.08LGAKK11 pKa = 9.27EE12 pKa = 4.0VGSVLRR18 pKa = 11.84SHH20 pKa = 6.97KK21 pKa = 10.44GAGRR25 pKa = 11.84GVAILDD31 pKa = 4.29FILRR35 pKa = 11.84LVGIVATLASAIAMATTNEE54 pKa = 4.17SLPFFTQFIRR64 pKa = 11.84FRR66 pKa = 11.84AKK68 pKa = 10.95YY69 pKa = 9.92NDD71 pKa = 3.74LPTFTFFVAANSVVCAYY88 pKa = 10.6LVLSLALSIFHH99 pKa = 7.09IVRR102 pKa = 11.84SSAQNSRR109 pKa = 11.84VVLIFFDD116 pKa = 3.81TGMLGLLSAGASASAAIVYY135 pKa = 8.38LAHH138 pKa = 7.37KK139 pKa = 10.58GNTRR143 pKa = 11.84ANWFAICQQFNSFCQRR159 pKa = 11.84TSGSLIGSFGGMIVLVLLILMSAANLSRR187 pKa = 11.84SRR189 pKa = 3.69

Molecular weight: 20.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

21374

2732

24106

10991492

29

5106

456.0

50.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.031 ± 0.013

1.812 ± 0.007

5.351 ± 0.011

6.545 ± 0.017

4.094 ± 0.009

6.587 ± 0.014

2.383 ± 0.007

5.228 ± 0.009

6.025 ± 0.015

9.62 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.411 ± 0.006

4.347 ± 0.008

5.032 ± 0.012

3.71 ± 0.01

5.474 ± 0.012

8.923 ± 0.02

4.807 ± 0.008

6.527 ± 0.009

1.272 ± 0.005

2.811 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski