Gordonia Phage Jablanski

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 82 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D5G1M6|A0A7D5G1M6_9CAUD Uncharacterized protein OS=Gordonia Phage Jablanski OX=2743982 GN=50 PE=4 SV=1
MM1 pKa = 6.83TTPPPPPMFTLPEE14 pKa = 4.24YY15 pKa = 10.39PGVTYY20 pKa = 9.85TVLTGSGGVPGLPSNAVRR38 pKa = 11.84IVGTAVNPWYY48 pKa = 10.23EE49 pKa = 3.52PGYY52 pKa = 11.14NYY54 pKa = 10.89GQDD57 pKa = 3.41PNGFTEE63 pKa = 5.2ITDD66 pKa = 2.91PWKK69 pKa = 10.68RR70 pKa = 11.84HH71 pKa = 4.27TEE73 pKa = 4.0QIEE76 pKa = 4.19VTNTGFLAPTAPVPAEE92 pKa = 4.4PPPSSPATEE101 pKa = 4.6PEE103 pKa = 4.12PEE105 pKa = 4.08PTPEE109 pKa = 3.89EE110 pKa = 4.26VV111 pKa = 3.16

Molecular weight: 11.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7D5JUM2|A0A7D5JUM2_9CAUD Uncharacterized protein OS=Gordonia Phage Jablanski OX=2743982 GN=32 PE=4 SV=1
MM1 pKa = 7.75SVRR4 pKa = 11.84LKK6 pKa = 10.91FNIDD10 pKa = 2.68GFYY13 pKa = 10.88DD14 pKa = 3.72LRR16 pKa = 11.84RR17 pKa = 11.84DD18 pKa = 3.66PGIVGQEE25 pKa = 3.64EE26 pKa = 4.98AIAQQICDD34 pKa = 3.57RR35 pKa = 11.84ANSIGKK41 pKa = 8.2GTYY44 pKa = 10.12AVGSRR49 pKa = 11.84QGRR52 pKa = 11.84KK53 pKa = 9.29APQGRR58 pKa = 11.84WRR60 pKa = 11.84TTVVTADD67 pKa = 3.27ARR69 pKa = 11.84AMANNARR76 pKa = 11.84NNTLIRR82 pKa = 11.84AMEE85 pKa = 3.98

Molecular weight: 9.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

82

0

82

17204

47

1878

209.8

22.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.701 ± 0.536

0.965 ± 0.164

6.934 ± 0.273

5.673 ± 0.247

2.738 ± 0.131

8.55 ± 0.465

2.052 ± 0.218

4.644 ± 0.183

3.313 ± 0.206

7.673 ± 0.254

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.023 ± 0.121

2.953 ± 0.192

5.574 ± 0.326

3.784 ± 0.383

7.719 ± 0.405

5.743 ± 0.252

6.853 ± 0.28

6.952 ± 0.252

1.994 ± 0.153

2.162 ± 0.158
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski