Vibrio aerogenes CECT 7868

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio aerogenes

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4565 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5XSE5|A0A1M5XSE5_9VIBR Uncharacterized protein OS=Vibrio aerogenes CECT 7868 OX=1216006 GN=VA7868_01292 PE=4 SV=1
MM1 pKa = 7.48IPVDD5 pKa = 3.62SKK7 pKa = 10.17TYY9 pKa = 9.68HH10 pKa = 6.73LLYY13 pKa = 10.23TDD15 pKa = 3.92EE16 pKa = 5.3FGDD19 pKa = 4.71DD20 pKa = 3.37VGLDD24 pKa = 3.77EE25 pKa = 5.4VQLLDD30 pKa = 3.94PPLKK34 pKa = 10.53EE35 pKa = 5.09RR36 pKa = 11.84IPDD39 pKa = 4.13LLALLDD45 pKa = 4.6SPDD48 pKa = 3.56QFISYY53 pKa = 10.09QAMLILSAWGNDD65 pKa = 2.98SGIYY69 pKa = 10.28FLDD72 pKa = 4.73SIIDD76 pKa = 3.56DD77 pKa = 4.19EE78 pKa = 5.28KK79 pKa = 9.52IHH81 pKa = 6.32EE82 pKa = 4.71SGFEE86 pKa = 3.69LHH88 pKa = 7.4RR89 pKa = 11.84ITDD92 pKa = 3.44EE93 pKa = 4.42DD94 pKa = 3.57NVYY97 pKa = 11.23DD98 pKa = 4.04EE99 pKa = 5.26LAYY102 pKa = 9.44ATYY105 pKa = 10.43FF106 pKa = 3.47

Molecular weight: 12.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5ZHA7|A0A1M5ZHA7_9VIBR tRNA modification GTPase MnmE OS=Vibrio aerogenes CECT 7868 OX=1216006 GN=mnmE PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84KK29 pKa = 9.39VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4565

0

4565

1492859

29

4322

327.0

36.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.361 ± 0.034

1.168 ± 0.014

5.458 ± 0.026

6.023 ± 0.035

4.056 ± 0.025

6.864 ± 0.035

2.592 ± 0.016

6.398 ± 0.03

4.999 ± 0.034

10.126 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.684 ± 0.017

3.904 ± 0.022

4.122 ± 0.026

4.966 ± 0.033

4.807 ± 0.028

6.749 ± 0.034

5.468 ± 0.032

6.793 ± 0.031

1.254 ± 0.014

3.21 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski