Podoviridae sp. ctKoA10

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 50 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2WA12|A0A5Q2WA12_9CAUD Uncharacterized protein OS=Podoviridae sp. ctKoA10 OX=2656709 PE=4 SV=1
MM1 pKa = 6.92ITKK4 pKa = 10.5GDD6 pKa = 4.25LIKK9 pKa = 11.03GAMQHH14 pKa = 6.16LAVDD18 pKa = 4.48GLLMQPMAQDD28 pKa = 3.34NQSALQHH35 pKa = 6.64LDD37 pKa = 3.81DD38 pKa = 5.25FAATYY43 pKa = 10.51SAIGQDD49 pKa = 2.91IGYY52 pKa = 8.19LQPLEE57 pKa = 4.52YY58 pKa = 9.38GTSTEE63 pKa = 4.19TDD65 pKa = 3.18DD66 pKa = 4.91SGVDD70 pKa = 3.5VSLVGPIKK78 pKa = 10.72VLLAGYY84 pKa = 8.72IANMFGKK91 pKa = 9.77EE92 pKa = 4.0LNPNKK97 pKa = 10.39LSWAEE102 pKa = 3.81NMMMRR107 pKa = 11.84QLTTVEE113 pKa = 4.15SCSYY117 pKa = 10.55PVTLPVGSGNYY128 pKa = 9.18EE129 pKa = 3.92AMDD132 pKa = 3.79DD133 pKa = 3.58QQYY136 pKa = 10.36YY137 pKa = 10.38RR138 pKa = 11.84GGLPFEE144 pKa = 4.48NN145 pKa = 4.3

Molecular weight: 15.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2WAG1|A0A5Q2WAG1_9CAUD D-alanyl-D-alanine carboxypeptidase OS=Podoviridae sp. ctKoA10 OX=2656709 PE=4 SV=1
MM1 pKa = 7.17TLNRR5 pKa = 11.84QKK7 pKa = 11.32LDD9 pKa = 2.93IGFSDD14 pKa = 3.3RR15 pKa = 11.84HH16 pKa = 5.52NFGEE20 pKa = 4.43AVRR23 pKa = 11.84QRR25 pKa = 11.84LTVGSNNQQGAFKK38 pKa = 10.82

Molecular weight: 4.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

50

0

50

10255

29

700

205.1

22.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.122 ± 0.516

1.112 ± 0.195

5.792 ± 0.257

5.802 ± 0.463

3.686 ± 0.216

7.557 ± 0.517

1.482 ± 0.2

5.617 ± 0.324

5.89 ± 0.444

8.133 ± 0.329

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.506 ± 0.205

4.378 ± 0.3

3.618 ± 0.215

5.266 ± 0.411

4.281 ± 0.221

6.894 ± 0.385

6.348 ± 0.397

6.533 ± 0.304

1.385 ± 0.15

3.598 ± 0.229
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski