Avibacterium paragallinarum (Haemophilus gallinarum)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Avibacterium

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2171 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F5EPP6|A0A0F5EPP6_AVIPA YcfA-like protein OS=Avibacterium paragallinarum OX=728 GN=NCTC10926_01266 PE=3 SV=1
MM1 pKa = 7.62CIDD4 pKa = 4.07TSTLCDD10 pKa = 3.15IYY12 pKa = 10.87LDD14 pKa = 3.56QVDD17 pKa = 4.07VVEE20 pKa = 5.42PIFSNFGGLTSFHH33 pKa = 6.44GKK35 pKa = 7.51VTTVKK40 pKa = 10.41CFEE43 pKa = 4.51NNGLIAEE50 pKa = 4.16ILEE53 pKa = 4.34EE54 pKa = 4.18NGEE57 pKa = 4.18GRR59 pKa = 11.84VLLVDD64 pKa = 3.54GGGAVRR70 pKa = 11.84QALLDD75 pKa = 3.87AEE77 pKa = 4.58LAQLAADD84 pKa = 4.38NGWEE88 pKa = 4.36GIIVYY93 pKa = 9.79GAVRR97 pKa = 11.84QIQQLEE103 pKa = 4.23NIDD106 pKa = 3.7IGIQALAPIPVGANSDD122 pKa = 3.67TQGEE126 pKa = 3.91VDD128 pKa = 3.33IPVNFGGVTFFPEE141 pKa = 4.3DD142 pKa = 3.43YY143 pKa = 10.81VYY145 pKa = 11.59ADD147 pKa = 3.49LTGIILSQEE156 pKa = 4.03PLDD159 pKa = 5.57LEE161 pKa = 4.93DD162 pKa = 3.68LTEE165 pKa = 3.93

Molecular weight: 17.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F5EW23|A0A0F5EW23_AVIPA Mu-like prophage FluMu protein gp16 OS=Avibacterium paragallinarum OX=728 GN=Z012_11315 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2171

0

2171

635325

32

2196

292.6

32.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.369 ± 0.058

1.047 ± 0.019

4.805 ± 0.039

6.402 ± 0.055

4.36 ± 0.04

6.633 ± 0.055

2.126 ± 0.027

6.941 ± 0.049

6.174 ± 0.049

10.636 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.429 ± 0.025

4.731 ± 0.044

3.815 ± 0.03

5.358 ± 0.062

4.602 ± 0.04

5.648 ± 0.039

5.096 ± 0.034

6.389 ± 0.053

1.173 ± 0.021

3.266 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski