Haloterrigena limicola JCM 13563

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena; Haloterrigena limicola

Average proteome isoelectric point is 4.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3519 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M0CNB2|M0CNB2_9EURY Uncharacterized protein OS=Haloterrigena limicola JCM 13563 OX=1230457 GN=C476_03693 PE=4 SV=1
MM1 pKa = 8.39VLMEE5 pKa = 5.08SDD7 pKa = 4.23SEE9 pKa = 4.64LEE11 pKa = 4.54AGDD14 pKa = 3.68TAPDD18 pKa = 3.8FEE20 pKa = 5.72LEE22 pKa = 4.19GVDD25 pKa = 3.44GNRR28 pKa = 11.84YY29 pKa = 7.04SHH31 pKa = 6.87EE32 pKa = 4.18SFVDD36 pKa = 3.61NEE38 pKa = 3.93ALLVVFTCNHH48 pKa = 5.85CPYY51 pKa = 10.38AQAKK55 pKa = 9.77FDD57 pKa = 4.45LLNDD61 pKa = 3.99LSAEE65 pKa = 4.11YY66 pKa = 10.88DD67 pKa = 3.59DD68 pKa = 4.23VAVVGINSNDD78 pKa = 3.37AEE80 pKa = 4.61EE81 pKa = 4.79YY82 pKa = 10.31PDD84 pKa = 4.67DD85 pKa = 4.5SFEE88 pKa = 4.69AMQTYY93 pKa = 10.47VDD95 pKa = 5.34DD96 pKa = 4.03GTIDD100 pKa = 3.3YY101 pKa = 9.96DD102 pKa = 3.55AYY104 pKa = 11.33LRR106 pKa = 11.84DD107 pKa = 3.58EE108 pKa = 4.5SQDD111 pKa = 3.2VARR114 pKa = 11.84AYY116 pKa = 10.5GAVCTPDD123 pKa = 3.2PFLFARR129 pKa = 11.84SDD131 pKa = 3.68GEE133 pKa = 3.95FRR135 pKa = 11.84LVYY138 pKa = 10.16HH139 pKa = 6.68GRR141 pKa = 11.84LDD143 pKa = 4.38DD144 pKa = 5.1ALNPDD149 pKa = 4.2DD150 pKa = 4.58EE151 pKa = 4.55PTRR154 pKa = 11.84FHH156 pKa = 6.99IRR158 pKa = 11.84EE159 pKa = 4.45AIDD162 pKa = 3.33AVLAGEE168 pKa = 4.22EE169 pKa = 4.79VDD171 pKa = 6.13LEE173 pKa = 4.31WQPSQGCSIKK183 pKa = 10.42WKK185 pKa = 10.59DD186 pKa = 3.47DD187 pKa = 3.27

Molecular weight: 21.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M0CQN7|M0CQN7_9EURY PAS/PAC sensor protein OS=Haloterrigena limicola JCM 13563 OX=1230457 GN=C476_01670 PE=4 SV=1
MM1 pKa = 7.39TNVNSRR7 pKa = 11.84TANKK11 pKa = 10.16LSIVSTLIDD20 pKa = 3.13SALAFRR26 pKa = 11.84RR27 pKa = 11.84GRR29 pKa = 11.84PKK31 pKa = 10.66SGLLLLGAAALSSRR45 pKa = 11.84IPGLGTAVSVLLRR58 pKa = 11.84LVRR61 pKa = 11.84RR62 pKa = 11.84FRR64 pKa = 4.4

Molecular weight: 6.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3519

0

3519

958682

24

2167

272.4

29.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.69 ± 0.064

0.762 ± 0.015

8.556 ± 0.056

8.707 ± 0.062

3.214 ± 0.028

8.065 ± 0.04

2.04 ± 0.022

4.598 ± 0.031

1.895 ± 0.027

9.014 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.779 ± 0.019

2.383 ± 0.025

4.567 ± 0.027

2.698 ± 0.026

6.311 ± 0.048

5.512 ± 0.035

6.765 ± 0.036

8.624 ± 0.047

1.107 ± 0.016

2.71 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski