Amino acid dipepetide frequency for Rosellinia necatrix fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.42AlaAla: 4.42 ± 2.729
0.491AlaCys: 0.491 ± 0.236
4.912AlaAsp: 4.912 ± 1.386
5.403AlaGlu: 5.403 ± 0.318
2.947AlaPhe: 2.947 ± 0.443
3.929AlaGly: 3.929 ± 1.025
1.473AlaHis: 1.473 ± 0.707
2.947AlaIle: 2.947 ± 0.526
5.403AlaLys: 5.403 ± 4.198
7.859AlaLeu: 7.859 ± 0.111
1.473AlaMet: 1.473 ± 0.263
2.456AlaAsn: 2.456 ± 0.208
3.438AlaPro: 3.438 ± 1.649
2.947AlaGln: 2.947 ± 2.466
4.42AlaArg: 4.42 ± 1.15
3.438AlaSer: 3.438 ± 2.23
2.947AlaThr: 2.947 ± 0.526
3.438AlaVal: 3.438 ± 0.291
2.456AlaTrp: 2.456 ± 0.208
0.982AlaTyr: 0.982 ± 0.471
0.0AlaXaa: 0.0 ± 0.0
Cys
0.982CysAla: 0.982 ± 0.471
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.491CysGlu: 0.491 ± 0.236
0.491CysPhe: 0.491 ± 0.236
0.491CysGly: 0.491 ± 0.236
0.491CysHis: 0.491 ± 0.236
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.982CysLeu: 0.982 ± 0.471
0.0CysMet: 0.0 ± 0.0
0.491CysAsn: 0.491 ± 0.236
0.491CysPro: 0.491 ± 0.236
0.491CysGln: 0.491 ± 0.236
0.0CysArg: 0.0 ± 0.0
1.473CysSer: 1.473 ± 1.233
0.491CysThr: 0.491 ± 0.236
0.491CysVal: 0.491 ± 0.236
0.0CysTrp: 0.0 ± 0.0
0.491CysTyr: 0.491 ± 0.236
0.0CysXaa: 0.0 ± 0.0
Asp
1.965AspAla: 1.965 ± 1.967
0.0AspCys: 0.0 ± 0.0
2.456AspAsp: 2.456 ± 0.762
3.929AspGlu: 3.929 ± 1.995
1.473AspPhe: 1.473 ± 0.707
1.965AspGly: 1.965 ± 0.942
0.982AspHis: 0.982 ± 0.471
2.947AspIle: 2.947 ± 1.496
3.438AspLys: 3.438 ± 0.291
6.385AspLeu: 6.385 ± 0.153
1.473AspMet: 1.473 ± 0.263
3.438AspAsn: 3.438 ± 1.649
2.456AspPro: 2.456 ± 0.762
0.982AspGln: 0.982 ± 0.471
2.947AspArg: 2.947 ± 1.413
3.438AspSer: 3.438 ± 1.649
2.456AspThr: 2.456 ± 1.178
5.403AspVal: 5.403 ± 0.651
0.491AspTrp: 0.491 ± 0.734
0.491AspTyr: 0.491 ± 0.236
0.491AspXaa: 0.491 ± 0.734
Glu
3.438GluAla: 3.438 ± 1.261
0.982GluCys: 0.982 ± 0.499
4.912GluAsp: 4.912 ± 1.524
3.929GluGlu: 3.929 ± 1.025
2.947GluPhe: 2.947 ± 0.443
2.456GluGly: 2.456 ± 1.178
2.947GluHis: 2.947 ± 0.526
1.473GluIle: 1.473 ± 0.707
3.929GluLys: 3.929 ± 1.995
6.876GluLeu: 6.876 ± 1.551
0.982GluMet: 0.982 ± 0.471
1.965GluAsn: 1.965 ± 0.942
1.965GluPro: 1.965 ± 0.942
1.965GluGln: 1.965 ± 0.997
2.456GluArg: 2.456 ± 0.208
3.929GluSer: 3.929 ± 3.935
0.491GluThr: 0.491 ± 0.236
5.403GluVal: 5.403 ± 2.258
2.456GluTrp: 2.456 ± 1.178
2.947GluTyr: 2.947 ± 0.526
0.0GluXaa: 0.0 ± 0.0
Phe
1.965PheAla: 1.965 ± 0.997
0.491PheCys: 0.491 ± 0.236
2.456PheAsp: 2.456 ± 1.178
4.912PheGlu: 4.912 ± 0.416
0.982PhePhe: 0.982 ± 0.471
2.456PheGly: 2.456 ± 0.208
0.491PheHis: 0.491 ± 0.236
3.438PheIle: 3.438 ± 1.649
4.42PheLys: 4.42 ± 1.15
8.35PheLeu: 8.35 ± 0.125
1.965PheMet: 1.965 ± 0.942
0.491PheAsn: 0.491 ± 0.236
1.965PhePro: 1.965 ± 0.942
1.965PheGln: 1.965 ± 0.942
0.982PheArg: 0.982 ± 0.499
2.947PheSer: 2.947 ± 0.526
2.456PheThr: 2.456 ± 1.178
5.403PheVal: 5.403 ± 0.651
2.947PheTrp: 2.947 ± 0.526
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.947GlyAla: 2.947 ± 1.413
0.0GlyCys: 0.0 ± 0.0
3.438GlyAsp: 3.438 ± 1.261
0.982GlyGlu: 0.982 ± 0.471
4.42GlyPhe: 4.42 ± 1.15
2.947GlyGly: 2.947 ± 1.496
0.982GlyHis: 0.982 ± 0.471
2.456GlyIle: 2.456 ± 1.178
5.403GlyLys: 5.403 ± 1.288
11.788GlyLeu: 11.788 ± 1.774
2.456GlyMet: 2.456 ± 0.208
0.491GlyAsn: 0.491 ± 0.236
0.982GlyPro: 0.982 ± 0.499
1.473GlyGln: 1.473 ± 0.707
2.947GlyArg: 2.947 ± 1.413
4.912GlySer: 4.912 ± 0.554
2.947GlyThr: 2.947 ± 0.443
3.438GlyVal: 3.438 ± 0.679
1.473GlyTrp: 1.473 ± 0.707
3.438GlyTyr: 3.438 ± 1.649
0.0GlyXaa: 0.0 ± 0.0
His
2.456HisAla: 2.456 ± 0.762
0.0HisCys: 0.0 ± 0.0
0.491HisAsp: 0.491 ± 0.236
0.0HisGlu: 0.0 ± 0.0
0.491HisPhe: 0.491 ± 0.236
1.473HisGly: 1.473 ± 0.707
1.473HisHis: 1.473 ± 0.707
0.0HisIle: 0.0 ± 0.0
0.491HisLys: 0.491 ± 0.236
2.456HisLeu: 2.456 ± 0.762
0.0HisMet: 0.0 ± 0.0
0.491HisAsn: 0.491 ± 0.236
0.982HisPro: 0.982 ± 0.471
0.491HisGln: 0.491 ± 0.236
0.982HisArg: 0.982 ± 0.499
2.456HisSer: 2.456 ± 0.762
1.965HisThr: 1.965 ± 0.028
1.965HisVal: 1.965 ± 0.942
0.491HisTrp: 0.491 ± 0.236
1.473HisTyr: 1.473 ± 0.707
0.0HisXaa: 0.0 ± 0.0
Ile
2.456IleAla: 2.456 ± 0.208
0.982IleCys: 0.982 ± 0.471
2.456IleAsp: 2.456 ± 1.178
3.438IleGlu: 3.438 ± 0.679
2.947IlePhe: 2.947 ± 1.413
2.456IleGly: 2.456 ± 1.178
0.982IleHis: 0.982 ± 0.471
4.912IleIle: 4.912 ± 1.386
4.42IleLys: 4.42 ± 1.15
4.42IleLeu: 4.42 ± 0.79
2.456IleMet: 2.456 ± 1.178
0.982IleAsn: 0.982 ± 0.471
2.456IlePro: 2.456 ± 1.178
0.982IleGln: 0.982 ± 0.499
3.929IleArg: 3.929 ± 0.915
3.438IleSer: 3.438 ± 0.291
1.965IleThr: 1.965 ± 0.942
2.947IleVal: 2.947 ± 0.443
0.491IleTrp: 0.491 ± 0.236
2.456IleTyr: 2.456 ± 0.208
0.0IleXaa: 0.0 ± 0.0
Lys
5.403LysAla: 5.403 ± 2.258
0.982LysCys: 0.982 ± 0.471
2.456LysAsp: 2.456 ± 0.762
5.894LysGlu: 5.894 ± 3.962
3.929LysPhe: 3.929 ± 1.025
2.456LysGly: 2.456 ± 0.762
0.982LysHis: 0.982 ± 0.471
2.456LysIle: 2.456 ± 0.762
5.403LysLys: 5.403 ± 0.651
8.841LysLeu: 8.841 ± 3.519
1.965LysMet: 1.965 ± 1.379
1.473LysAsn: 1.473 ± 1.233
2.947LysPro: 2.947 ± 0.526
4.42LysGln: 4.42 ± 3.699
2.947LysArg: 2.947 ± 0.443
4.912LysSer: 4.912 ± 0.554
2.947LysThr: 2.947 ± 0.526
6.876LysVal: 6.876 ± 2.521
3.438LysTrp: 3.438 ± 0.679
1.473LysTyr: 1.473 ± 0.707
0.0LysXaa: 0.0 ± 0.0
Leu
5.894LeuAla: 5.894 ± 0.083
1.473LeuCys: 1.473 ± 0.263
7.367LeuAsp: 7.367 ± 0.624
6.876LeuGlu: 6.876 ± 1.551
4.42LeuPhe: 4.42 ± 0.18
8.841LeuGly: 8.841 ± 2.3
2.947LeuHis: 2.947 ± 0.526
5.894LeuIle: 5.894 ± 2.827
7.367LeuLys: 7.367 ± 3.256
9.823LeuLeu: 9.823 ± 1.802
2.947LeuMet: 2.947 ± 1.413
6.385LeuAsn: 6.385 ± 6.636
5.894LeuPro: 5.894 ± 0.887
1.473LeuGln: 1.473 ± 0.263
4.912LeuArg: 4.912 ± 1.524
10.806LeuSer: 10.806 ± 1.303
7.859LeuThr: 7.859 ± 2.05
7.859LeuVal: 7.859 ± 0.859
2.456LeuTrp: 2.456 ± 1.178
2.947LeuTyr: 2.947 ± 0.443
0.0LeuXaa: 0.0 ± 0.0
Met
2.456MetAla: 2.456 ± 0.762
0.0MetCys: 0.0 ± 0.0
1.473MetAsp: 1.473 ± 0.707
1.473MetGlu: 1.473 ± 0.263
0.982MetPhe: 0.982 ± 0.499
0.982MetGly: 0.982 ± 0.471
0.491MetHis: 0.491 ± 0.236
0.0MetIle: 0.0 ± 0.0
2.456MetLys: 2.456 ± 0.208
2.947MetLeu: 2.947 ± 1.496
0.491MetMet: 0.491 ± 0.236
0.491MetAsn: 0.491 ± 0.734
0.982MetPro: 0.982 ± 0.471
0.491MetGln: 0.491 ± 0.236
0.982MetArg: 0.982 ± 0.471
3.929MetSer: 3.929 ± 0.055
1.965MetThr: 1.965 ± 0.942
1.473MetVal: 1.473 ± 0.707
0.491MetTrp: 0.491 ± 0.236
0.491MetTyr: 0.491 ± 0.236
0.0MetXaa: 0.0 ± 0.0
Asn
3.438AsnAla: 3.438 ± 1.261
0.0AsnCys: 0.0 ± 0.0
1.473AsnAsp: 1.473 ± 0.707
2.456AsnGlu: 2.456 ± 0.762
1.965AsnPhe: 1.965 ± 0.942
2.947AsnGly: 2.947 ± 0.443
0.982AsnHis: 0.982 ± 0.471
2.947AsnIle: 2.947 ± 1.413
2.456AsnLys: 2.456 ± 2.702
1.965AsnLeu: 1.965 ± 0.997
0.491AsnMet: 0.491 ± 0.734
0.982AsnAsn: 0.982 ± 1.469
1.473AsnPro: 1.473 ± 0.263
0.982AsnGln: 0.982 ± 0.499
0.0AsnArg: 0.0 ± 0.0
4.42AsnSer: 4.42 ± 0.18
1.965AsnThr: 1.965 ± 0.028
2.456AsnVal: 2.456 ± 0.208
0.491AsnTrp: 0.491 ± 0.236
1.965AsnTyr: 1.965 ± 0.942
0.0AsnXaa: 0.0 ± 0.0
Pro
2.947ProAla: 2.947 ± 0.443
0.491ProCys: 0.491 ± 0.236
4.42ProAsp: 4.42 ± 1.15
0.0ProGlu: 0.0 ± 0.0
3.929ProPhe: 3.929 ± 0.055
2.947ProGly: 2.947 ± 0.443
0.0ProHis: 0.0 ± 0.0
2.947ProIle: 2.947 ± 0.443
2.947ProLys: 2.947 ± 2.466
4.42ProLeu: 4.42 ± 2.12
0.0ProMet: 0.0 ± 0.0
1.965ProAsn: 1.965 ± 0.028
2.456ProPro: 2.456 ± 1.178
0.491ProGln: 0.491 ± 0.734
1.473ProArg: 1.473 ± 0.263
5.894ProSer: 5.894 ± 1.857
2.456ProThr: 2.456 ± 0.208
2.456ProVal: 2.456 ± 1.178
0.0ProTrp: 0.0 ± 0.0
1.473ProTyr: 1.473 ± 0.263
0.0ProXaa: 0.0 ± 0.0
Gln
2.456GlnAla: 2.456 ± 0.762
0.0GlnCys: 0.0 ± 0.0
0.982GlnAsp: 0.982 ± 1.469
0.982GlnGlu: 0.982 ± 0.471
0.491GlnPhe: 0.491 ± 0.236
1.965GlnGly: 1.965 ± 0.997
0.491GlnHis: 0.491 ± 0.236
0.982GlnIle: 0.982 ± 0.499
3.438GlnLys: 3.438 ± 2.23
2.947GlnLeu: 2.947 ± 0.526
0.491GlnMet: 0.491 ± 0.734
1.473GlnAsn: 1.473 ± 0.263
0.0GlnPro: 0.0 ± 0.0
0.0GlnGln: 0.0 ± 0.0
1.473GlnArg: 1.473 ± 0.707
0.982GlnSer: 0.982 ± 0.499
1.965GlnThr: 1.965 ± 0.997
1.965GlnVal: 1.965 ± 0.942
0.0GlnTrp: 0.0 ± 0.0
0.982GlnTyr: 0.982 ± 0.499
0.0GlnXaa: 0.0 ± 0.0
Arg
2.456ArgAla: 2.456 ± 1.732
0.491ArgCys: 0.491 ± 0.236
0.982ArgAsp: 0.982 ± 0.471
2.456ArgGlu: 2.456 ± 0.208
1.473ArgPhe: 1.473 ± 0.707
0.982ArgGly: 0.982 ± 0.471
1.473ArgHis: 1.473 ± 0.707
1.965ArgIle: 1.965 ± 0.942
5.403ArgLys: 5.403 ± 1.288
7.367ArgLeu: 7.367 ± 0.624
0.491ArgMet: 0.491 ± 0.236
0.0ArgAsn: 0.0 ± 0.0
2.947ArgPro: 2.947 ± 0.526
0.982ArgGln: 0.982 ± 0.499
2.947ArgArg: 2.947 ± 0.443
4.42ArgSer: 4.42 ± 1.15
3.929ArgThr: 3.929 ± 0.915
3.438ArgVal: 3.438 ± 0.679
0.982ArgTrp: 0.982 ± 1.469
1.473ArgTyr: 1.473 ± 0.707
0.0ArgXaa: 0.0 ± 0.0
Ser
6.876SerAla: 6.876 ± 0.582
0.982SerCys: 0.982 ± 0.471
3.438SerAsp: 3.438 ± 0.291
3.438SerGlu: 3.438 ± 0.291
7.367SerPhe: 7.367 ± 1.594
6.385SerGly: 6.385 ± 0.817
1.473SerHis: 1.473 ± 1.233
7.859SerIle: 7.859 ± 1.829
4.912SerLys: 4.912 ± 2.494
7.367SerLeu: 7.367 ± 1.316
0.491SerMet: 0.491 ± 0.236
2.947SerAsn: 2.947 ± 0.443
4.912SerPro: 4.912 ± 1.524
0.982SerGln: 0.982 ± 0.471
4.42SerArg: 4.42 ± 1.759
6.876SerSer: 6.876 ± 0.582
6.876SerThr: 6.876 ± 2.328
4.912SerVal: 4.912 ± 0.554
1.473SerTrp: 1.473 ± 0.263
2.947SerTyr: 2.947 ± 0.526
0.0SerXaa: 0.0 ± 0.0
Thr
3.929ThrAla: 3.929 ± 1.884
0.491ThrCys: 0.491 ± 0.236
1.473ThrAsp: 1.473 ± 1.233
3.438ThrGlu: 3.438 ± 1.261
2.456ThrPhe: 2.456 ± 0.208
6.385ThrGly: 6.385 ± 2.092
0.491ThrHis: 0.491 ± 0.734
4.42ThrIle: 4.42 ± 1.15
3.929ThrLys: 3.929 ± 1.995
7.859ThrLeu: 7.859 ± 0.859
1.473ThrMet: 1.473 ± 0.707
3.438ThrAsn: 3.438 ± 0.679
2.456ThrPro: 2.456 ± 1.178
0.491ThrGln: 0.491 ± 0.236
1.965ThrArg: 1.965 ± 0.997
5.403ThrSer: 5.403 ± 0.651
2.456ThrThr: 2.456 ± 0.208
2.456ThrVal: 2.456 ± 0.208
0.0ThrTrp: 0.0 ± 0.0
0.491ThrTyr: 0.491 ± 0.734
0.0ThrXaa: 0.0 ± 0.0
Val
7.367ValAla: 7.367 ± 0.624
0.491ValCys: 0.491 ± 0.236
2.456ValAsp: 2.456 ± 0.762
4.912ValGlu: 4.912 ± 0.554
3.438ValPhe: 3.438 ± 1.261
4.42ValGly: 4.42 ± 1.15
0.491ValHis: 0.491 ± 0.236
2.456ValIle: 2.456 ± 1.178
3.929ValLys: 3.929 ± 0.915
6.876ValLeu: 6.876 ± 0.388
2.947ValMet: 2.947 ± 0.526
1.965ValAsn: 1.965 ± 0.942
2.456ValPro: 2.456 ± 0.208
1.473ValGln: 1.473 ± 0.263
3.438ValArg: 3.438 ± 0.291
8.35ValSer: 8.35 ± 0.845
5.894ValThr: 5.894 ± 0.083
4.42ValVal: 4.42 ± 0.18
1.965ValTrp: 1.965 ± 0.942
2.456ValTyr: 2.456 ± 0.208
0.0ValXaa: 0.0 ± 0.0
Trp
0.491TrpAla: 0.491 ± 0.236
0.0TrpCys: 0.0 ± 0.0
0.491TrpAsp: 0.491 ± 0.236
1.473TrpGlu: 1.473 ± 0.263
2.947TrpPhe: 2.947 ± 1.413
1.473TrpGly: 1.473 ± 0.707
0.0TrpHis: 0.0 ± 0.0
0.491TrpIle: 0.491 ± 0.236
1.473TrpLys: 1.473 ± 0.707
1.965TrpLeu: 1.965 ± 0.997
0.491TrpMet: 0.491 ± 0.236
0.982TrpAsn: 0.982 ± 0.471
1.473TrpPro: 1.473 ± 0.707
0.0TrpGln: 0.0 ± 0.0
1.473TrpArg: 1.473 ± 0.707
0.982TrpSer: 0.982 ± 0.471
0.982TrpThr: 0.982 ± 1.469
2.947TrpVal: 2.947 ± 0.526
0.491TrpTrp: 0.491 ± 0.236
2.456TrpTyr: 2.456 ± 0.208
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.438TyrAla: 3.438 ± 1.649
0.0TyrCys: 0.0 ± 0.0
1.473TyrAsp: 1.473 ± 0.707
1.965TyrGlu: 1.965 ± 0.028
0.982TyrPhe: 0.982 ± 0.471
1.965TyrGly: 1.965 ± 0.028
0.982TyrHis: 0.982 ± 0.499
0.982TyrIle: 0.982 ± 0.471
1.473TyrLys: 1.473 ± 1.233
2.947TyrLeu: 2.947 ± 1.413
1.473TyrMet: 1.473 ± 0.416
2.947TyrAsn: 2.947 ± 0.443
0.982TyrPro: 0.982 ± 0.499
0.982TyrGln: 0.982 ± 0.499
1.965TyrArg: 1.965 ± 0.942
3.929TyrSer: 3.929 ± 0.055
0.491TyrThr: 0.491 ± 0.236
1.965TyrVal: 1.965 ± 0.942
0.491TyrTrp: 0.491 ± 0.236
0.982TyrTyr: 0.982 ± 0.471
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.491XaaVal: 0.491 ± 0.734
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2037 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski