Lonchura striata domestica (Bengalese finch)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria;

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15252 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A218UU03|A0A218UU03_9PASE P-type Cu(+) transporter OS=Lonchura striata domestica OX=299123 GN=ATP7A PE=4 SV=1
MM1 pKa = 7.61RR2 pKa = 11.84SVLVFVCLVGMASTFSVKK20 pKa = 9.52SWLLRR25 pKa = 11.84PKK27 pKa = 10.68LDD29 pKa = 3.98DD30 pKa = 3.79SEE32 pKa = 4.53EE33 pKa = 3.99NAVFKK38 pKa = 10.53RR39 pKa = 11.84QHH41 pKa = 4.39RR42 pKa = 11.84HH43 pKa = 3.81YY44 pKa = 9.3LYY46 pKa = 10.51KK47 pKa = 10.56YY48 pKa = 8.22IYY50 pKa = 9.72VYY52 pKa = 10.48SPQRR56 pKa = 11.84RR57 pKa = 11.84YY58 pKa = 10.02QGSDD62 pKa = 2.81SSEE65 pKa = 4.14EE66 pKa = 4.0EE67 pKa = 4.01GDD69 pKa = 3.57GSEE72 pKa = 4.25EE73 pKa = 4.12EE74 pKa = 4.51EE75 pKa = 4.24EE76 pKa = 4.67GEE78 pKa = 4.03PFYY81 pKa = 11.23AGTKK85 pKa = 9.38AAGHH89 pKa = 6.35PAGVAPEE96 pKa = 4.36DD97 pKa = 3.85CQGALTGDD105 pKa = 3.58VTSPQQSEE113 pKa = 4.56GCQRR117 pKa = 11.84IRR119 pKa = 11.84QRR121 pKa = 11.84TANKK125 pKa = 10.43EE126 pKa = 3.79EE127 pKa = 4.36DD128 pKa = 3.99SEE130 pKa = 5.68NEE132 pKa = 3.81DD133 pKa = 3.02SDD135 pKa = 4.01EE136 pKa = 4.45NEE138 pKa = 4.03EE139 pKa = 4.09EE140 pKa = 4.38EE141 pKa = 4.16EE142 pKa = 4.63DD143 pKa = 4.2EE144 pKa = 5.17EE145 pKa = 5.23VDD147 pKa = 3.79EE148 pKa = 5.51NEE150 pKa = 4.03NGVNGTSTNTTEE162 pKa = 5.28GIGPHH167 pKa = 6.52GNGTVAAEE175 pKa = 4.12EE176 pKa = 4.15ATGEE180 pKa = 4.08AEE182 pKa = 3.98EE183 pKa = 4.38EE184 pKa = 4.32EE185 pKa = 4.29EE186 pKa = 4.57GEE188 pKa = 4.12EE189 pKa = 4.08EE190 pKa = 4.15EE191 pKa = 4.44EE192 pKa = 4.19EE193 pKa = 4.23EE194 pKa = 4.21EE195 pKa = 4.21EE196 pKa = 4.21EE197 pKa = 4.21EE198 pKa = 4.38EE199 pKa = 4.31EE200 pKa = 4.29EE201 pKa = 4.28EE202 pKa = 4.34EE203 pKa = 4.05EE204 pKa = 5.47AEE206 pKa = 4.16ATTIASTTNEE216 pKa = 4.08EE217 pKa = 4.57GLTQATTIDD226 pKa = 3.9DD227 pKa = 4.58GGPTDD232 pKa = 3.8ATTDD236 pKa = 3.17ATTVGEE242 pKa = 3.97LWEE245 pKa = 4.28YY246 pKa = 11.32DD247 pKa = 3.46VTARR251 pKa = 11.84DD252 pKa = 3.47HH253 pKa = 6.85SRR255 pKa = 11.84GEE257 pKa = 3.96EE258 pKa = 4.19GTTEE262 pKa = 4.32GGYY265 pKa = 10.63EE266 pKa = 4.11DD267 pKa = 3.39QDD269 pKa = 3.33EE270 pKa = 4.43YY271 pKa = 11.94ARR273 pKa = 11.84GDD275 pKa = 3.38SYY277 pKa = 11.26RR278 pKa = 11.84AYY280 pKa = 9.36EE281 pKa = 4.68DD282 pKa = 3.56EE283 pKa = 3.82YY284 pKa = 11.36GYY286 pKa = 11.4YY287 pKa = 9.75KK288 pKa = 10.73GHH290 pKa = 6.85GYY292 pKa = 10.44DD293 pKa = 4.46VYY295 pKa = 11.29GQDD298 pKa = 3.68YY299 pKa = 10.48YY300 pKa = 11.86YY301 pKa = 11.11SQQ303 pKa = 3.52

Molecular weight: 33.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A218UBT3|A0A218UBT3_9PASE Inhibitor of growth protein OS=Lonchura striata domestica OX=299123 GN=ING5 PE=3 SV=1
MM1 pKa = 7.28WRR3 pKa = 11.84VALPRR8 pKa = 11.84WLPRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84GLGQHH20 pKa = 6.39RR21 pKa = 11.84PHH23 pKa = 6.54LQLSPAAGQLGRR35 pKa = 11.84AGGRR39 pKa = 11.84LSQAAPLRR47 pKa = 11.84RR48 pKa = 11.84GAAGGAGAAA57 pKa = 4.23

Molecular weight: 5.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15247

5

15252

8504911

8

16936

557.6

62.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.093 ± 0.02

2.239 ± 0.016

4.937 ± 0.014

7.289 ± 0.025

3.675 ± 0.014

6.294 ± 0.022

2.528 ± 0.01

4.523 ± 0.014

6.001 ± 0.026

9.793 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.24 ± 0.01

3.789 ± 0.015

5.791 ± 0.026

4.751 ± 0.02

5.52 ± 0.019

8.27 ± 0.026

5.192 ± 0.016

6.129 ± 0.018

1.193 ± 0.006

2.749 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski