Thioploca ingrica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3951 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A090AIY7|A0A090AIY7_9GAMM Uncharacterized protein OS=Thioploca ingrica OX=40754 GN=THII_1155 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 10.46FSDD5 pKa = 4.05EE6 pKa = 4.2DD7 pKa = 3.95VEE9 pKa = 4.91LLAEE13 pKa = 4.3LFEE16 pKa = 4.31EE17 pKa = 4.4QQYY20 pKa = 10.91QDD22 pKa = 3.8EE23 pKa = 4.84LMLGLQTIDD32 pKa = 2.7SHH34 pKa = 6.11MLVPSNQDD42 pKa = 2.87WHH44 pKa = 7.06PDD46 pKa = 2.99FAEE49 pKa = 4.72IYY51 pKa = 8.59NQLIEE56 pKa = 5.23LEE58 pKa = 5.04DD59 pKa = 3.99GLPYY63 pKa = 9.95IPYY66 pKa = 9.88ISLVKK71 pKa = 10.35HH72 pKa = 6.01

Molecular weight: 8.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A090AJM4|A0A090AJM4_9GAMM Polyhydroxyalkonate synthesis repressor PhaR OS=Thioploca ingrica OX=40754 GN=THII_0838 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.53RR3 pKa = 11.84TFQPSILVRR12 pKa = 11.84KK13 pKa = 8.93RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.49GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 9.75TKK25 pKa = 10.43DD26 pKa = 3.02GRR28 pKa = 11.84KK29 pKa = 8.8IIKK32 pKa = 9.64ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.3GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3951

0

3951

1382316

39

6326

349.9

39.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.839 ± 0.043

1.036 ± 0.016

4.748 ± 0.032

6.067 ± 0.044

3.88 ± 0.024

6.334 ± 0.047

2.37 ± 0.021

7.027 ± 0.034

4.826 ± 0.037

11.176 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.041 ± 0.022

4.493 ± 0.036

4.775 ± 0.031

5.748 ± 0.043

4.584 ± 0.038

5.83 ± 0.032

6.293 ± 0.049

6.237 ± 0.034

1.448 ± 0.02

3.248 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski