Streptococcus phage Javan93

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 43 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6ANS0|A0A4D6ANS0_9CAUD Tail length tape-measure protein OS=Streptococcus phage Javan93 OX=2548316 GN=Javan93_0034 PE=4 SV=1
MM1 pKa = 7.48EE2 pKa = 5.02LVKK5 pKa = 10.02TIQIGDD11 pKa = 4.56DD12 pKa = 3.37IYY14 pKa = 11.61LPIPDD19 pKa = 3.64QFGIQEE25 pKa = 4.13GQKK28 pKa = 10.56FNLYY32 pKa = 9.72QSNDD36 pKa = 3.16GTLVLSPSDD45 pKa = 3.65SKK47 pKa = 11.57LSADD51 pKa = 3.9YY52 pKa = 10.88QSLSSDD58 pKa = 3.54EE59 pKa = 4.4QEE61 pKa = 4.3TTVVEE66 pKa = 4.1QATLDD71 pKa = 3.65EE72 pKa = 4.6VANSVLSRR80 pKa = 11.84HH81 pKa = 6.06LDD83 pKa = 3.29AFKK86 pKa = 10.92EE87 pKa = 4.0LAEE90 pKa = 4.13

Molecular weight: 9.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6ANR2|A0A4D6ANR2_9CAUD Uncharacterized protein OS=Streptococcus phage Javan93 OX=2548316 GN=Javan93_0024 PE=4 SV=1
MM1 pKa = 7.74PRR3 pKa = 11.84RR4 pKa = 11.84PSTPCKK10 pKa = 10.2QHH12 pKa = 5.85GCPNLVTYY20 pKa = 9.66GNKK23 pKa = 10.06YY24 pKa = 10.5CDD26 pKa = 3.43DD27 pKa = 3.88HH28 pKa = 6.67KK29 pKa = 11.53ANHH32 pKa = 6.38ALDD35 pKa = 3.9VKK37 pKa = 8.95STKK40 pKa = 10.63AKK42 pKa = 10.28GYY44 pKa = 7.37NARR47 pKa = 11.84WNKK50 pKa = 9.75ARR52 pKa = 11.84LRR54 pKa = 11.84YY55 pKa = 9.61LKK57 pKa = 10.27LHH59 pKa = 6.54PLCVYY64 pKa = 8.54CQRR67 pKa = 11.84KK68 pKa = 9.01GRR70 pKa = 11.84LTKK73 pKa = 10.07ATVVDD78 pKa = 5.28HH79 pKa = 6.23ITPHH83 pKa = 7.14RR84 pKa = 11.84GDD86 pKa = 4.72QDD88 pKa = 4.61LFWNQSNWQALCKK101 pKa = 10.09SCHH104 pKa = 5.64DD105 pKa = 4.22RR106 pKa = 11.84KK107 pKa = 8.93TKK109 pKa = 8.13TTDD112 pKa = 2.64RR113 pKa = 11.84YY114 pKa = 10.3VEE116 pKa = 3.73YY117 pKa = 10.38SYY119 pKa = 11.5RR120 pKa = 11.84FF121 pKa = 3.35

Molecular weight: 14.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

43

0

43

11832

37

1039

275.2

30.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.032 ± 0.48

0.955 ± 0.162

6.119 ± 0.367

7.142 ± 0.381

3.668 ± 0.203

6.863 ± 0.371

1.978 ± 0.164

5.646 ± 0.354

7.387 ± 0.277

9.263 ± 0.216

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.265 ± 0.16

4.234 ± 0.18

3.093 ± 0.269

4.37 ± 0.274

4.572 ± 0.397

6.728 ± 0.424

7.032 ± 0.458

6.609 ± 0.277

1.403 ± 0.105

3.643 ± 0.268
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski