Oligella urethralis DNF00040

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella; Oligella urethralis

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A096BDZ9|A0A096BDZ9_9BURK Lysine decarboxylase OS=Oligella urethralis DNF00040 OX=1401065 GN=HMPREF2130_03485 PE=3 SV=1
MM1 pKa = 7.46QDD3 pKa = 3.34YY4 pKa = 11.1LSTTFHH10 pKa = 6.3RR11 pKa = 11.84HH12 pKa = 3.92INAHH16 pKa = 5.86QGDD19 pKa = 4.07TLEE22 pKa = 5.79DD23 pKa = 2.89IGLEE27 pKa = 3.75LRR29 pKa = 11.84ANVEE33 pKa = 4.0GSQLFLCFVIAPTDD47 pKa = 3.77YY48 pKa = 11.16EE49 pKa = 4.8LLPQILPEE57 pKa = 4.09EE58 pKa = 4.15RR59 pKa = 11.84FEE61 pKa = 4.1MGSVHH66 pKa = 6.07VAEE69 pKa = 4.36LHH71 pKa = 6.04EE72 pKa = 5.14LNDD75 pKa = 4.11PEE77 pKa = 5.77DD78 pKa = 4.71EE79 pKa = 4.31ISSILDD85 pKa = 3.33NANDD89 pKa = 3.8GDD91 pKa = 4.17TLVFFCASGEE101 pKa = 4.03ILAAALAALAYY112 pKa = 10.12NEE114 pKa = 4.4EE115 pKa = 4.41SSAFF119 pKa = 3.61

Molecular weight: 13.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A095Z701|A0A095Z701_9BURK Cell shape-determining protein MreB OS=Oligella urethralis DNF00040 OX=1401065 GN=mreB PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.2TKK25 pKa = 10.25GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2118

0

2118

687764

37

3338

324.7

36.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.979 ± 0.062

0.869 ± 0.016

5.26 ± 0.042

6.341 ± 0.067

4.031 ± 0.041

6.91 ± 0.057

2.258 ± 0.026

6.194 ± 0.042

4.722 ± 0.051

10.709 ± 0.088

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.534 ± 0.025

3.693 ± 0.041

4.207 ± 0.036

4.634 ± 0.057

5.447 ± 0.049

6.175 ± 0.045

4.889 ± 0.042

6.933 ± 0.044

1.227 ± 0.021

2.989 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski