Rhizophagus sp. MUCL 43196

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus; unclassified Rhizophagus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22985 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A372QEK2|A0A372QEK2_9GLOM Uncharacterized protein OS=Rhizophagus sp. MUCL 43196 OX=1803374 GN=C1646_770661 PE=4 SV=1
MM1 pKa = 7.81DD2 pKa = 4.53NVHH5 pKa = 6.29KK6 pKa = 10.69RR7 pKa = 11.84HH8 pKa = 5.82LFEE11 pKa = 5.03MYY13 pKa = 10.3SSADD17 pKa = 3.67EE18 pKa = 4.9EE19 pKa = 4.19IDD21 pKa = 5.83DD22 pKa = 4.44INEE25 pKa = 3.98LQDD28 pKa = 3.33EE29 pKa = 4.65YY30 pKa = 11.54KK31 pKa = 10.57SVSSEE36 pKa = 3.88EE37 pKa = 4.15DD38 pKa = 3.24CVLFDD43 pKa = 4.58LEE45 pKa = 4.81EE46 pKa = 4.49NFVSNRR52 pKa = 11.84QLSPEE57 pKa = 3.79ILEE60 pKa = 4.45KK61 pKa = 10.64IKK63 pKa = 10.69FLVNIDD69 pKa = 4.07CGAGPIIRR77 pKa = 11.84ALQNIFSEE85 pKa = 4.84TVIHH89 pKa = 6.7PKK91 pKa = 10.18VEE93 pKa = 3.96DD94 pKa = 3.56WNDD97 pKa = 3.25LLKK100 pKa = 11.23NEE102 pKa = 4.13ITVGEE107 pKa = 4.27GQDD110 pKa = 3.55EE111 pKa = 4.33DD112 pKa = 5.82GEE114 pKa = 4.56DD115 pKa = 3.5NEE117 pKa = 5.37DD118 pKa = 3.88YY119 pKa = 11.23EE120 pKa = 5.54DD121 pKa = 5.27GEE123 pKa = 4.74DD124 pKa = 5.15GEE126 pKa = 4.95DD127 pKa = 3.76GNYY130 pKa = 10.77GDD132 pKa = 6.21DD133 pKa = 4.76DD134 pKa = 6.16DD135 pKa = 6.28EE136 pKa = 7.01DD137 pKa = 3.92EE138 pKa = 4.78QSDD141 pKa = 5.19DD142 pKa = 4.31EE143 pKa = 4.45EE144 pKa = 4.98QDD146 pKa = 4.26DD147 pKa = 4.0VDD149 pKa = 3.96TRR151 pKa = 11.84SEE153 pKa = 3.9KK154 pKa = 11.24LNFFEE159 pKa = 6.52DD160 pKa = 4.6DD161 pKa = 3.95YY162 pKa = 11.66EE163 pKa = 4.97SSIVNLHH170 pKa = 5.52TLITYY175 pKa = 9.59HH176 pKa = 5.43NHH178 pKa = 5.47ANIHH182 pKa = 5.51EE183 pKa = 4.78FICDD187 pKa = 3.52SGCMKK192 pKa = 10.49FCNNPFLFSGFGSTFQNEE210 pKa = 4.19ANNFHH215 pKa = 6.93INLLSIILHH224 pKa = 6.71MITISILTCYY234 pKa = 9.95FAISVYY240 pKa = 10.39DD241 pKa = 3.96ASDD244 pKa = 3.27EE245 pKa = 4.13LLL247 pKa = 4.28

Molecular weight: 28.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A372QQP0|A0A372QQP0_9GLOM Uncharacterized protein OS=Rhizophagus sp. MUCL 43196 OX=1803374 GN=C1646_712387 PE=4 SV=1
RR1 pKa = 8.37SPFSIVFPFPFPLRR15 pKa = 11.84FLSPSFSLFPFPIAFPFPFPFHH37 pKa = 7.14SPLSLPFVFTFPFVPFSFVFPFPFRR62 pKa = 11.84SSLSISLRR70 pKa = 11.84FPFVFPFPFVFPFPNRR86 pKa = 11.84LPLFPSSSPFPSSSPFPFVSHH107 pKa = 6.78FPNRR111 pKa = 11.84LPFPLRR117 pKa = 11.84FRR119 pKa = 11.84FFQLSSPFPFRR130 pKa = 11.84FPFPLRR136 pKa = 11.84FPFPFIFPFPFVFPFPFVFPFPFVFPFPFVFPFPFVFPP174 pKa = 4.67

Molecular weight: 20.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22984

1

22985

7538093

49

4766

328.0

37.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.406 ± 0.015

1.558 ± 0.008

5.8 ± 0.012

7.011 ± 0.017

4.692 ± 0.012

4.483 ± 0.015

2.146 ± 0.007

8.324 ± 0.016

7.96 ± 0.019

9.132 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.988 ± 0.006

7.163 ± 0.018

4.018 ± 0.015

3.72 ± 0.014

4.279 ± 0.013

7.851 ± 0.018

5.229 ± 0.012

4.974 ± 0.012

1.175 ± 0.006

4.067 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski