Capybara microvirus Cap1_SP_22

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4U5|A0A4P8W4U5_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_22 OX=2584777 PE=4 SV=1
MM1 pKa = 7.43TNKK4 pKa = 9.88QKK6 pKa = 10.95FNGVNSFVVKK16 pKa = 10.87LSDD19 pKa = 3.59VPPFSSPTMLYY30 pKa = 10.79CLDD33 pKa = 4.87DD34 pKa = 4.55DD35 pKa = 4.2NKK37 pKa = 10.24VRR39 pKa = 11.84LKK41 pKa = 11.12VVDD44 pKa = 3.18KK45 pKa = 10.57CLNLGPVSNYY55 pKa = 10.63DD56 pKa = 3.65LQTLIDD62 pKa = 3.75NGVNISSMHH71 pKa = 5.99YY72 pKa = 9.99EE73 pKa = 4.15PNDD76 pKa = 3.39DD77 pKa = 3.62RR78 pKa = 11.84LLGVEE83 pKa = 4.63RR84 pKa = 11.84LNTFNPPADD93 pKa = 3.69NDD95 pKa = 4.43SNPNN99 pKa = 3.34

Molecular weight: 11.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7F3|A0A4P8W7F3_9VIRU Peptidase M15 OS=Capybara microvirus Cap1_SP_22 OX=2584777 PE=4 SV=1
MM1 pKa = 7.31LVSNPTNYY9 pKa = 7.45VTPWQPVMLDD19 pKa = 3.48VPNVRR24 pKa = 11.84SFTYY28 pKa = 10.43LSSLQRR34 pKa = 11.84SYY36 pKa = 11.5YY37 pKa = 8.68IRR39 pKa = 11.84SYY41 pKa = 11.77YY42 pKa = 10.52EE43 pKa = 3.61FLEE46 pKa = 4.4TKK48 pKa = 9.85NRR50 pKa = 11.84NGKK53 pKa = 8.17TIFLTFNYY61 pKa = 9.53NDD63 pKa = 3.34NAIPSIYY70 pKa = 10.44GIPCCNNDD78 pKa = 3.97HH79 pKa = 6.38IHH81 pKa = 5.82YY82 pKa = 10.24LLRR85 pKa = 11.84NSSFIKK91 pKa = 9.73WVRR94 pKa = 11.84QHH96 pKa = 6.83FDD98 pKa = 2.8FSYY101 pKa = 10.4IVCTEE106 pKa = 3.94FGEE109 pKa = 4.85GKK111 pKa = 10.31GKK113 pKa = 10.23RR114 pKa = 11.84GKK116 pKa = 10.62GNNPHH121 pKa = 5.37YY122 pKa = 10.45HH123 pKa = 6.26ALFYY127 pKa = 10.95LCHH130 pKa = 6.98KK131 pKa = 10.26DD132 pKa = 3.48NSQVTPLDD140 pKa = 3.67CAEE143 pKa = 3.95VLSYY147 pKa = 10.23IRR149 pKa = 11.84KK150 pKa = 8.19IWQGNPYY157 pKa = 9.38KK158 pKa = 10.6ASSKK162 pKa = 10.21NDD164 pKa = 2.94PRR166 pKa = 11.84KK167 pKa = 9.78FKK169 pKa = 10.49FGKK172 pKa = 10.19VEE174 pKa = 3.94EE175 pKa = 4.52SEE177 pKa = 4.22KK178 pKa = 11.14GLIVNDD184 pKa = 3.83FHH186 pKa = 7.36AANYY190 pKa = 7.82VSKK193 pKa = 10.94YY194 pKa = 7.19ATKK197 pKa = 10.6DD198 pKa = 3.25KK199 pKa = 8.97EE200 pKa = 4.66TKK202 pKa = 10.42CIIRR206 pKa = 11.84KK207 pKa = 8.87ILNAHH212 pKa = 6.32YY213 pKa = 10.21NDD215 pKa = 4.41CLHH218 pKa = 6.75KK219 pKa = 10.94VEE221 pKa = 4.96LDD223 pKa = 3.18EE224 pKa = 5.7SINHH228 pKa = 5.79TRR230 pKa = 11.84LSLVDD235 pKa = 3.8PFVMPGTTFNDD246 pKa = 3.55KK247 pKa = 10.54VDD249 pKa = 3.36IMVKK253 pKa = 9.85QDD255 pKa = 3.17AQILYY260 pKa = 10.53DD261 pKa = 3.77EE262 pKa = 4.71TLPTIKK268 pKa = 9.52KK269 pKa = 7.71TFLPKK274 pKa = 10.53VFMSKK279 pKa = 10.41GFGSSASKK287 pKa = 11.03YY288 pKa = 8.71ITDD291 pKa = 4.06DD292 pKa = 3.24FKK294 pKa = 11.46MPILTHH300 pKa = 6.61KK301 pKa = 8.96GTIYY305 pKa = 9.7VTLPYY310 pKa = 10.17YY311 pKa = 10.21IYY313 pKa = 10.73RR314 pKa = 11.84KK315 pKa = 7.8TFYY318 pKa = 10.42DD319 pKa = 3.38VKK321 pKa = 10.96KK322 pKa = 9.92NANGNVIYY330 pKa = 10.6VLNNVGTEE338 pKa = 3.85YY339 pKa = 10.79RR340 pKa = 11.84KK341 pKa = 10.04NRR343 pKa = 11.84LSKK346 pKa = 10.45DD347 pKa = 2.96IRR349 pKa = 11.84DD350 pKa = 4.29LYY352 pKa = 10.68SKK354 pKa = 10.49CISILHH360 pKa = 6.24NSDD363 pKa = 3.2TLSNNDD369 pKa = 3.58SEE371 pKa = 4.38EE372 pKa = 4.46DD373 pKa = 3.13IYY375 pKa = 11.76ANKK378 pKa = 9.36IRR380 pKa = 11.84HH381 pKa = 5.53LHH383 pKa = 6.26HH384 pKa = 6.51SLKK387 pKa = 10.5SHH389 pKa = 6.07VSAPFLDD396 pKa = 4.25PMHH399 pKa = 7.22AYY401 pKa = 10.26ASYY404 pKa = 10.66KK405 pKa = 10.26YY406 pKa = 9.45IYY408 pKa = 9.78QYY410 pKa = 11.27RR411 pKa = 11.84CFEE414 pKa = 4.1GLEE417 pKa = 4.23FPLDD421 pKa = 4.03LNDD424 pKa = 5.31DD425 pKa = 4.09FALKK429 pKa = 10.43LLPGYY434 pKa = 10.73YY435 pKa = 10.0YY436 pKa = 11.35GEE438 pKa = 4.37FSNSPILTYY447 pKa = 10.65KK448 pKa = 10.61EE449 pKa = 3.89LTKK452 pKa = 11.07SNWHH456 pKa = 6.72PFSEE460 pKa = 4.47HH461 pKa = 6.37SSFVPLIPLFNVLDD475 pKa = 3.96KK476 pKa = 11.64YY477 pKa = 11.24FDD479 pKa = 3.74LVGIQLDD486 pKa = 3.44DD487 pKa = 3.63ARR489 pKa = 11.84YY490 pKa = 9.85KK491 pKa = 10.51RR492 pKa = 11.84YY493 pKa = 9.57LRR495 pKa = 11.84KK496 pKa = 10.11KK497 pKa = 8.22MLFNFFSKK505 pKa = 10.69YY506 pKa = 8.9KK507 pKa = 10.44RR508 pKa = 11.84KK509 pKa = 10.1

Molecular weight: 59.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1713

99

583

342.6

39.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.546 ± 1.268

1.693 ± 0.428

6.421 ± 0.612

4.32 ± 0.789

5.838 ± 0.889

5.137 ± 0.605

2.393 ± 0.568

5.721 ± 0.397

6.83 ± 0.874

9.048 ± 0.302

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.926 ± 0.353

7.823 ± 0.883

3.853 ± 0.614

3.736 ± 1.085

3.678 ± 0.256

8.173 ± 0.624

6.305 ± 0.698

4.845 ± 0.737

0.992 ± 0.304

5.721 ± 1.095
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski