Amino acid dipepetide frequency for Hardenbergia virus A

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.296AlaAla: 2.296 ± 1.082
1.531AlaCys: 1.531 ± 0.491
0.765AlaAsp: 0.765 ± 0.361
2.679AlaGlu: 2.679 ± 0.049
1.531AlaPhe: 1.531 ± 0.721
2.296AlaGly: 2.296 ± 0.131
1.914AlaHis: 1.914 ± 0.311
3.062AlaIle: 3.062 ± 0.983
3.444AlaLys: 3.444 ± 1.622
4.21AlaLeu: 4.21 ± 1.983
1.531AlaMet: 1.531 ± 0.721
2.296AlaAsn: 2.296 ± 1.082
2.296AlaPro: 2.296 ± 1.343
1.914AlaGln: 1.914 ± 0.311
2.296AlaArg: 2.296 ± 1.343
1.148AlaSer: 1.148 ± 0.541
2.296AlaThr: 2.296 ± 1.082
2.679AlaVal: 2.679 ± 1.163
0.0AlaTrp: 0.0 ± 0.0
1.148AlaTyr: 1.148 ± 0.541
0.0AlaXaa: 0.0 ± 0.0
Cys
1.148CysAla: 1.148 ± 0.541
1.914CysCys: 1.914 ± 0.311
0.765CysAsp: 0.765 ± 0.361
0.383CysGlu: 0.383 ± 1.032
1.914CysPhe: 1.914 ± 0.901
0.765CysGly: 0.765 ± 0.361
0.765CysHis: 0.765 ± 0.852
0.765CysIle: 0.765 ± 2.064
3.062CysLys: 3.062 ± 2.195
3.444CysLeu: 3.444 ± 1.622
1.531CysMet: 1.531 ± 1.007
1.531CysAsn: 1.531 ± 0.721
0.765CysPro: 0.765 ± 2.064
0.383CysGln: 0.383 ± 1.032
0.765CysArg: 0.765 ± 0.361
1.148CysSer: 1.148 ± 0.541
0.383CysThr: 0.383 ± 0.18
0.383CysVal: 0.383 ± 0.18
0.383CysTrp: 0.383 ± 0.18
0.765CysTyr: 0.765 ± 0.361
0.0CysXaa: 0.0 ± 0.0
Asp
2.296AspAla: 2.296 ± 1.082
0.765AspCys: 0.765 ± 0.361
2.679AspAsp: 2.679 ± 1.262
4.592AspGlu: 4.592 ± 1.474
4.592AspPhe: 4.592 ± 2.163
3.444AspGly: 3.444 ± 2.015
0.765AspHis: 0.765 ± 0.361
3.444AspIle: 3.444 ± 2.015
3.827AspLys: 3.827 ± 1.835
3.444AspLeu: 3.444 ± 1.622
0.383AspMet: 0.383 ± 0.18
2.296AspAsn: 2.296 ± 1.082
2.296AspPro: 2.296 ± 1.082
0.383AspGln: 0.383 ± 0.18
1.531AspArg: 1.531 ± 1.704
5.358AspSer: 5.358 ± 1.114
1.148AspThr: 1.148 ± 0.672
3.444AspVal: 3.444 ± 0.803
1.148AspTrp: 1.148 ± 0.541
2.296AspTyr: 2.296 ± 0.131
0.0AspXaa: 0.0 ± 0.0
Glu
3.444GluAla: 3.444 ± 0.41
1.531GluCys: 1.531 ± 0.491
1.531GluAsp: 1.531 ± 1.704
6.889GluGlu: 6.889 ± 2.817
3.062GluPhe: 3.062 ± 0.23
4.21GluGly: 4.21 ± 0.442
0.383GluHis: 0.383 ± 0.18
3.444GluIle: 3.444 ± 0.41
6.506GluLys: 6.506 ± 1.852
7.271GluLeu: 7.271 ± 0.212
1.148GluMet: 1.148 ± 0.541
7.654GluAsn: 7.654 ± 2.457
3.444GluPro: 3.444 ± 0.41
3.062GluGln: 3.062 ± 1.442
3.827GluArg: 3.827 ± 0.622
11.481GluSer: 11.481 ± 1.867
1.914GluThr: 1.914 ± 0.311
1.914GluVal: 1.914 ± 1.524
0.383GluTrp: 0.383 ± 0.18
2.296GluTyr: 2.296 ± 1.082
0.0GluXaa: 0.0 ± 0.0
Phe
2.679PheAla: 2.679 ± 1.262
1.914PheCys: 1.914 ± 0.901
4.21PheAsp: 4.21 ± 1.654
4.592PheGlu: 4.592 ± 1.474
4.592PhePhe: 4.592 ± 0.951
3.062PheGly: 3.062 ± 0.23
0.765PheHis: 0.765 ± 0.852
2.679PheIle: 2.679 ± 1.163
2.679PheLys: 2.679 ± 1.262
7.654PheLeu: 7.654 ± 2.393
1.914PheMet: 1.914 ± 0.311
3.444PheAsn: 3.444 ± 0.41
1.914PhePro: 1.914 ± 0.901
2.296PheGln: 2.296 ± 1.082
1.148PheArg: 1.148 ± 0.672
5.358PheSer: 5.358 ± 0.099
2.296PheThr: 2.296 ± 0.131
2.679PheVal: 2.679 ± 1.262
0.765PheTrp: 0.765 ± 0.361
0.765PheTyr: 0.765 ± 0.852
0.0PheXaa: 0.0 ± 0.0
Gly
1.914GlyAla: 1.914 ± 1.524
1.531GlyCys: 1.531 ± 0.491
1.914GlyAsp: 1.914 ± 0.901
3.827GlyGlu: 3.827 ± 0.59
3.827GlyPhe: 3.827 ± 0.59
1.914GlyGly: 1.914 ± 1.524
0.765GlyHis: 0.765 ± 0.852
2.296GlyIle: 2.296 ± 1.343
4.21GlyLys: 4.21 ± 1.654
3.827GlyLeu: 3.827 ± 0.59
0.765GlyMet: 0.765 ± 0.361
2.296GlyAsn: 2.296 ± 0.131
1.914GlyPro: 1.914 ± 1.524
1.914GlyGln: 1.914 ± 1.524
4.592GlyArg: 4.592 ± 2.687
5.741GlySer: 5.741 ± 2.146
1.914GlyThr: 1.914 ± 0.311
4.592GlyVal: 4.592 ± 2.687
1.531GlyTrp: 1.531 ± 0.721
1.914GlyTyr: 1.914 ± 1.524
0.0GlyXaa: 0.0 ± 0.0
His
1.148HisAla: 1.148 ± 0.541
0.383HisCys: 0.383 ± 0.18
0.765HisAsp: 0.765 ± 0.361
1.531HisGlu: 1.531 ± 0.491
0.765HisPhe: 0.765 ± 0.852
1.531HisGly: 1.531 ± 2.916
1.148HisHis: 1.148 ± 0.672
1.531HisIle: 1.531 ± 0.721
1.914HisLys: 1.914 ± 0.311
3.827HisLeu: 3.827 ± 1.803
0.383HisMet: 0.383 ± 0.18
0.0HisAsn: 0.0 ± 0.0
1.148HisPro: 1.148 ± 0.672
0.765HisGln: 0.765 ± 0.361
1.531HisArg: 1.531 ± 1.704
3.444HisSer: 3.444 ± 0.41
0.383HisThr: 0.383 ± 0.18
0.765HisVal: 0.765 ± 0.361
0.0HisTrp: 0.0 ± 0.0
1.531HisTyr: 1.531 ± 0.721
0.0HisXaa: 0.0 ± 0.0
Ile
1.148IleAla: 1.148 ± 0.541
0.765IleCys: 0.765 ± 0.361
6.123IleAsp: 6.123 ± 0.459
5.358IleGlu: 5.358 ± 1.311
2.679IlePhe: 2.679 ± 1.163
3.444IleGly: 3.444 ± 3.227
3.062IleHis: 3.062 ± 2.195
3.827IleIle: 3.827 ± 0.622
4.21IleLys: 4.21 ± 1.983
4.592IleLeu: 4.592 ± 0.262
1.148IleMet: 1.148 ± 0.541
3.444IleAsn: 3.444 ± 0.41
1.148IlePro: 1.148 ± 0.541
2.296IleGln: 2.296 ± 1.343
3.827IleArg: 3.827 ± 0.622
6.506IleSer: 6.506 ± 6.635
1.148IleThr: 1.148 ± 0.541
5.358IleVal: 5.358 ± 1.114
0.383IleTrp: 0.383 ± 0.18
2.679IleTyr: 2.679 ± 0.049
0.0IleXaa: 0.0 ± 0.0
Lys
3.827LysAla: 3.827 ± 1.803
2.296LysCys: 2.296 ± 1.343
4.21LysAsp: 4.21 ± 0.442
6.889LysGlu: 6.889 ± 2.032
5.741LysPhe: 5.741 ± 0.279
6.506LysGly: 6.506 ± 0.573
1.914LysHis: 1.914 ± 0.311
3.827LysIle: 3.827 ± 1.803
7.654LysLys: 7.654 ± 1.244
4.975LysLeu: 4.975 ± 1.131
1.148LysMet: 1.148 ± 0.541
3.827LysAsn: 3.827 ± 1.835
1.148LysPro: 1.148 ± 0.541
1.148LysGln: 1.148 ± 0.672
4.592LysArg: 4.592 ± 0.951
6.506LysSer: 6.506 ± 1.852
3.827LysThr: 3.827 ± 1.803
3.444LysVal: 3.444 ± 0.803
0.383LysTrp: 0.383 ± 0.18
1.914LysTyr: 1.914 ± 0.311
0.0LysXaa: 0.0 ± 0.0
Leu
4.21LeuAla: 4.21 ± 0.77
1.531LeuCys: 1.531 ± 0.721
6.506LeuAsp: 6.506 ± 0.573
5.741LeuGlu: 5.741 ± 1.492
3.827LeuPhe: 3.827 ± 0.59
5.741LeuGly: 5.741 ± 2.146
1.148LeuHis: 1.148 ± 0.672
6.123LeuIle: 6.123 ± 1.672
8.037LeuLys: 8.037 ± 3.786
10.716LeuLeu: 10.716 ± 3.835
1.914LeuMet: 1.914 ± 0.901
9.568LeuAsn: 9.568 ± 4.507
3.827LeuPro: 3.827 ± 1.803
1.914LeuGln: 1.914 ± 0.901
5.358LeuArg: 5.358 ± 2.524
9.568LeuSer: 9.568 ± 4.507
3.827LeuThr: 3.827 ± 1.803
6.123LeuVal: 6.123 ± 1.672
0.383LeuTrp: 0.383 ± 1.032
2.679LeuTyr: 2.679 ± 1.262
0.0LeuXaa: 0.0 ± 0.0
Met
1.148MetAla: 1.148 ± 0.541
1.531MetCys: 1.531 ± 0.491
0.383MetAsp: 0.383 ± 0.18
3.827MetGlu: 3.827 ± 0.59
0.383MetPhe: 0.383 ± 0.18
0.765MetGly: 0.765 ± 0.361
0.383MetHis: 0.383 ± 0.18
1.531MetIle: 1.531 ± 0.721
1.914MetLys: 1.914 ± 0.901
2.679MetLeu: 2.679 ± 0.049
1.148MetMet: 1.148 ± 0.541
1.531MetAsn: 1.531 ± 0.721
0.0MetPro: 0.0 ± 0.0
1.148MetGln: 1.148 ± 0.672
2.296MetArg: 2.296 ± 1.082
4.975MetSer: 4.975 ± 1.131
0.765MetThr: 0.765 ± 0.361
1.914MetVal: 1.914 ± 0.901
0.383MetTrp: 0.383 ± 0.18
0.383MetTyr: 0.383 ± 0.18
0.0MetXaa: 0.0 ± 0.0
Asn
3.062AsnAla: 3.062 ± 0.983
0.765AsnCys: 0.765 ± 0.852
3.444AsnAsp: 3.444 ± 0.803
3.444AsnGlu: 3.444 ± 2.015
4.21AsnPhe: 4.21 ± 0.77
4.21AsnGly: 4.21 ± 1.654
3.062AsnHis: 3.062 ± 1.442
1.148AsnIle: 1.148 ± 0.672
3.444AsnLys: 3.444 ± 1.622
6.889AsnLeu: 6.889 ± 3.245
0.765AsnMet: 0.765 ± 0.361
3.827AsnAsn: 3.827 ± 0.59
1.148AsnPro: 1.148 ± 0.541
3.444AsnGln: 3.444 ± 1.622
3.444AsnArg: 3.444 ± 0.41
3.444AsnSer: 3.444 ± 0.41
1.531AsnThr: 1.531 ± 0.491
3.827AsnVal: 3.827 ± 3.047
0.765AsnTrp: 0.765 ± 0.361
2.679AsnTyr: 2.679 ± 1.262
0.0AsnXaa: 0.0 ± 0.0
Pro
2.296ProAla: 2.296 ± 0.131
0.0ProCys: 0.0 ± 0.0
2.679ProAsp: 2.679 ± 1.262
1.914ProGlu: 1.914 ± 0.901
1.914ProPhe: 1.914 ± 0.311
2.296ProGly: 2.296 ± 1.343
0.765ProHis: 0.765 ± 0.361
1.531ProIle: 1.531 ± 0.491
2.679ProLys: 2.679 ± 1.262
2.296ProLeu: 2.296 ± 1.082
0.383ProMet: 0.383 ± 0.18
1.148ProAsn: 1.148 ± 1.884
0.765ProPro: 0.765 ± 0.361
0.383ProGln: 0.383 ± 0.18
0.765ProArg: 0.765 ± 0.361
3.062ProSer: 3.062 ± 2.195
1.531ProThr: 1.531 ± 0.721
2.296ProVal: 2.296 ± 1.082
0.765ProTrp: 0.765 ± 0.852
1.148ProTyr: 1.148 ± 0.541
0.0ProXaa: 0.0 ± 0.0
Gln
1.148GlnAla: 1.148 ± 0.541
1.148GlnCys: 1.148 ± 0.541
1.914GlnAsp: 1.914 ± 0.901
1.531GlnGlu: 1.531 ± 0.491
1.148GlnPhe: 1.148 ± 0.672
1.531GlnGly: 1.531 ± 0.491
0.765GlnHis: 0.765 ± 0.361
1.914GlnIle: 1.914 ± 1.524
3.062GlnLys: 3.062 ± 0.23
1.531GlnLeu: 1.531 ± 0.721
2.296GlnMet: 2.296 ± 0.131
2.296GlnAsn: 2.296 ± 1.082
1.148GlnPro: 1.148 ± 0.541
0.0GlnGln: 0.0 ± 0.0
1.148GlnArg: 1.148 ± 0.541
3.827GlnSer: 3.827 ± 0.622
1.914GlnThr: 1.914 ± 0.311
1.914GlnVal: 1.914 ± 0.901
0.0GlnTrp: 0.0 ± 0.0
1.148GlnTyr: 1.148 ± 0.672
0.0GlnXaa: 0.0 ± 0.0
Arg
1.531ArgAla: 1.531 ± 0.491
0.765ArgCys: 0.765 ± 0.361
0.765ArgAsp: 0.765 ± 0.852
4.21ArgGlu: 4.21 ± 2.867
4.21ArgPhe: 4.21 ± 1.983
1.914ArgGly: 1.914 ± 1.524
1.531ArgHis: 1.531 ± 0.721
3.444ArgIle: 3.444 ± 3.227
3.444ArgLys: 3.444 ± 0.41
6.506ArgLeu: 6.506 ± 0.64
4.21ArgMet: 4.21 ± 0.77
4.21ArgAsn: 4.21 ± 1.983
0.765ArgPro: 0.765 ± 0.361
0.383ArgGln: 0.383 ± 0.18
4.21ArgArg: 4.21 ± 4.079
5.358ArgSer: 5.358 ± 2.326
2.296ArgThr: 2.296 ± 0.131
2.679ArgVal: 2.679 ± 2.376
0.0ArgTrp: 0.0 ± 0.0
1.914ArgTyr: 1.914 ± 0.901
0.0ArgXaa: 0.0 ± 0.0
Ser
1.914SerAla: 1.914 ± 1.524
2.296SerCys: 2.296 ± 1.343
4.592SerAsp: 4.592 ± 2.687
7.654SerGlu: 7.654 ± 3.669
4.592SerPhe: 4.592 ± 2.687
3.444SerGly: 3.444 ± 0.803
2.679SerHis: 2.679 ± 1.262
8.802SerIle: 8.802 ± 1.916
6.889SerLys: 6.889 ± 2.817
11.864SerLeu: 11.864 ± 4.376
4.592SerMet: 4.592 ± 2.069
4.975SerAsn: 4.975 ± 2.506
3.062SerPro: 3.062 ± 1.442
4.21SerGln: 4.21 ± 0.442
4.592SerArg: 4.592 ± 1.474
11.098SerSer: 11.098 ± 3.259
4.592SerThr: 4.592 ± 0.951
3.062SerVal: 3.062 ± 0.23
1.148SerTrp: 1.148 ± 0.541
4.21SerTyr: 4.21 ± 0.77
0.0SerXaa: 0.0 ± 0.0
Thr
0.765ThrAla: 0.765 ± 0.361
1.148ThrCys: 1.148 ± 0.672
1.914ThrAsp: 1.914 ± 0.901
2.296ThrGlu: 2.296 ± 1.082
3.062ThrPhe: 3.062 ± 0.23
1.148ThrGly: 1.148 ± 0.541
0.383ThrHis: 0.383 ± 0.18
3.827ThrIle: 3.827 ± 0.622
2.296ThrLys: 2.296 ± 1.082
3.444ThrLeu: 3.444 ± 1.622
0.765ThrMet: 0.765 ± 0.361
0.765ThrAsn: 0.765 ± 0.361
1.914ThrPro: 1.914 ± 0.901
1.914ThrGln: 1.914 ± 0.901
1.531ThrArg: 1.531 ± 0.491
3.827ThrSer: 3.827 ± 1.835
0.765ThrThr: 0.765 ± 0.361
1.914ThrVal: 1.914 ± 0.901
0.383ThrTrp: 0.383 ± 0.18
1.914ThrTyr: 1.914 ± 0.901
0.0ThrXaa: 0.0 ± 0.0
Val
4.21ValAla: 4.21 ± 1.654
0.765ValCys: 0.765 ± 0.852
3.444ValAsp: 3.444 ± 0.803
4.592ValGlu: 4.592 ± 0.951
4.21ValPhe: 4.21 ± 0.442
1.914ValGly: 1.914 ± 0.311
1.914ValHis: 1.914 ± 0.311
4.21ValIle: 4.21 ± 0.77
2.679ValLys: 2.679 ± 1.163
4.975ValLeu: 4.975 ± 0.081
1.531ValMet: 1.531 ± 0.721
2.679ValAsn: 2.679 ± 2.376
1.914ValPro: 1.914 ± 2.736
1.148ValGln: 1.148 ± 0.672
3.062ValArg: 3.062 ± 1.442
3.062ValSer: 3.062 ± 1.442
1.914ValThr: 1.914 ± 0.901
0.765ValVal: 0.765 ± 0.361
0.0ValTrp: 0.0 ± 0.0
2.679ValTyr: 2.679 ± 0.049
0.0ValXaa: 0.0 ± 0.0
Trp
0.383TrpAla: 0.383 ± 0.18
0.0TrpCys: 0.0 ± 0.0
0.765TrpAsp: 0.765 ± 0.361
0.383TrpGlu: 0.383 ± 0.18
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.148TrpIle: 1.148 ± 0.541
1.531TrpLys: 1.531 ± 0.491
1.148TrpLeu: 1.148 ± 0.541
0.0TrpMet: 0.0 ± 0.0
0.383TrpAsn: 0.383 ± 0.18
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.914TrpArg: 1.914 ± 0.311
0.383TrpSer: 0.383 ± 0.18
0.383TrpThr: 0.383 ± 0.18
1.148TrpVal: 1.148 ± 0.541
0.383TrpTrp: 0.383 ± 0.18
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.765TyrAla: 0.765 ± 0.361
0.765TyrCys: 0.765 ± 0.852
0.765TyrAsp: 0.765 ± 0.361
3.062TyrGlu: 3.062 ± 1.442
1.148TyrPhe: 1.148 ± 0.541
3.062TyrGly: 3.062 ± 1.442
0.383TyrHis: 0.383 ± 0.18
4.592TyrIle: 4.592 ± 0.262
2.296TyrLys: 2.296 ± 1.082
3.444TyrLeu: 3.444 ± 1.622
1.148TyrMet: 1.148 ± 0.541
0.383TyrAsn: 0.383 ± 0.18
0.0TyrPro: 0.0 ± 0.0
2.679TyrGln: 2.679 ± 1.262
1.914TyrArg: 1.914 ± 1.524
4.975TyrSer: 4.975 ± 2.506
1.148TyrThr: 1.148 ± 0.541
0.765TyrVal: 0.765 ± 0.361
0.765TyrTrp: 0.765 ± 0.361
1.531TyrTyr: 1.531 ± 0.491
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2614 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski