Pseudoflavonifractor capillosus ATCC 29799

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Pseudoflavonifractor; Pseudoflavonifractor capillosus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4804 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A6NRS0|A6NRS0_9FIRM Uncharacterized protein OS=Pseudoflavonifractor capillosus ATCC 29799 OX=411467 GN=BACCAP_00898 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 10.13GKK4 pKa = 10.5KK5 pKa = 9.17IFSAALSLSLAAVLCLSGCTSAAAEE30 pKa = 4.38DD31 pKa = 4.57SNASSAVMPSVPPAEE46 pKa = 4.33TTVDD50 pKa = 3.71VPTSDD55 pKa = 3.79PLAPPEE61 pKa = 4.39GPVYY65 pKa = 10.47TIAQQHH71 pKa = 5.24QPDD74 pKa = 4.08LVRR77 pKa = 11.84VQGTVSVDD85 pKa = 2.88GDD87 pKa = 3.92RR88 pKa = 11.84ILVTNSNEE96 pKa = 3.38WAQYY100 pKa = 9.59PEE102 pKa = 4.15IVLSLEE108 pKa = 3.86KK109 pKa = 10.28DD110 pKa = 3.66TLILNAVDD118 pKa = 4.63GSAMAAEE125 pKa = 4.7DD126 pKa = 4.01LRR128 pKa = 11.84EE129 pKa = 4.11GEE131 pKa = 4.08YY132 pKa = 10.84VYY134 pKa = 10.83AYY136 pKa = 9.89VSPAMTDD143 pKa = 3.18SLPPITTAAVILAAIPADD161 pKa = 3.79YY162 pKa = 10.61AVPAYY167 pKa = 10.71SIVEE171 pKa = 3.95QVNVWEE177 pKa = 4.74GRR179 pKa = 11.84TSILMSDD186 pKa = 3.74DD187 pKa = 3.15VTYY190 pKa = 11.55SMSDD194 pKa = 3.17AEE196 pKa = 4.62LLAGPGFTCGTITLADD212 pKa = 3.56ITPGCGLLAWYY223 pKa = 10.29DD224 pKa = 3.61MLAEE228 pKa = 4.44SFPAQAWPVKK238 pKa = 10.34VMAIPSPYY246 pKa = 9.93DD247 pKa = 2.77AWAEE251 pKa = 4.02LEE253 pKa = 4.1PGRR256 pKa = 11.84LAVNGTEE263 pKa = 4.21VEE265 pKa = 4.24LTEE268 pKa = 5.07AEE270 pKa = 4.07QPYY273 pKa = 10.07VEE275 pKa = 5.48GEE277 pKa = 4.15TLMVPVRR284 pKa = 11.84AFAEE288 pKa = 4.02ALGCEE293 pKa = 4.78VIWNADD299 pKa = 3.4QPEE302 pKa = 4.67SISVWGEE309 pKa = 3.35GAEE312 pKa = 4.05YY313 pKa = 10.94LLTLGSDD320 pKa = 3.64RR321 pKa = 11.84AATGDD326 pKa = 3.79GGDD329 pKa = 3.7GTALTGAVTARR340 pKa = 11.84NGVSFLPADD349 pKa = 4.42DD350 pKa = 5.37LLNLHH355 pKa = 6.08NVRR358 pKa = 11.84AEE360 pKa = 4.15GLWPVV365 pKa = 3.43

Molecular weight: 38.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A6NST1|A6NST1_9FIRM Uncharacterized protein OS=Pseudoflavonifractor capillosus ATCC 29799 OX=411467 GN=BACCAP_01260 PE=4 SV=1
MM1 pKa = 7.57IFFGMINHH9 pKa = 6.64TPSFSFLAQILWSSRR24 pKa = 11.84QAARR28 pKa = 11.84RR29 pKa = 11.84ARR31 pKa = 11.84FLIFWHH37 pKa = 6.5PNIIAAQNRR46 pKa = 11.84KK47 pKa = 9.01AVNPP51 pKa = 4.06

Molecular weight: 5.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4804

0

4804

1302578

17

4122

271.1

30.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.327 ± 0.045

1.649 ± 0.02

5.672 ± 0.03

6.816 ± 0.037

3.867 ± 0.027

7.82 ± 0.041

1.817 ± 0.016

5.403 ± 0.03

4.683 ± 0.04

9.885 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.801 ± 0.021

3.342 ± 0.028

4.265 ± 0.026

3.523 ± 0.025

5.677 ± 0.047

5.794 ± 0.032

5.762 ± 0.049

7.147 ± 0.034

1.152 ± 0.013

3.598 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski