Amino acid dipepetide frequency for Wenzhou picorna-like virus 11

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.639AlaAla: 6.639 ± 0.0
1.021AlaCys: 1.021 ± 0.0
2.043AlaAsp: 2.043 ± 0.0
2.043AlaGlu: 2.043 ± 0.0
3.575AlaPhe: 3.575 ± 0.0
2.554AlaGly: 2.554 ± 0.0
1.021AlaHis: 1.021 ± 0.0
4.597AlaIle: 4.597 ± 0.0
2.043AlaLys: 2.043 ± 0.0
5.107AlaLeu: 5.107 ± 0.0
2.043AlaMet: 2.043 ± 0.0
4.086AlaAsn: 4.086 ± 0.0
3.575AlaPro: 3.575 ± 0.0
2.043AlaGln: 2.043 ± 0.0
3.575AlaArg: 3.575 ± 0.0
7.661AlaSer: 7.661 ± 0.0
3.064AlaThr: 3.064 ± 0.0
6.639AlaVal: 6.639 ± 0.0
0.511AlaTrp: 0.511 ± 0.0
2.043AlaTyr: 2.043 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.532CysAla: 1.532 ± 0.0
0.511CysCys: 0.511 ± 0.0
2.043CysAsp: 2.043 ± 0.0
1.532CysGlu: 1.532 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.532CysGly: 1.532 ± 0.0
1.021CysHis: 1.021 ± 0.0
1.021CysIle: 1.021 ± 0.0
1.532CysLys: 1.532 ± 0.0
4.086CysLeu: 4.086 ± 0.0
0.0CysMet: 0.0 ± 0.0
2.043CysAsn: 2.043 ± 0.0
2.554CysPro: 2.554 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.532CysArg: 1.532 ± 0.0
1.021CysSer: 1.021 ± 0.0
1.532CysThr: 1.532 ± 0.0
3.575CysVal: 3.575 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.021CysTyr: 1.021 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.021AspAla: 1.021 ± 0.0
1.021AspCys: 1.021 ± 0.0
3.575AspAsp: 3.575 ± 0.0
4.597AspGlu: 4.597 ± 0.0
2.554AspPhe: 2.554 ± 0.0
1.021AspGly: 1.021 ± 0.0
1.021AspHis: 1.021 ± 0.0
3.575AspIle: 3.575 ± 0.0
3.064AspLys: 3.064 ± 0.0
8.172AspLeu: 8.172 ± 0.0
1.021AspMet: 1.021 ± 0.0
1.532AspAsn: 1.532 ± 0.0
2.554AspPro: 2.554 ± 0.0
1.021AspGln: 1.021 ± 0.0
1.021AspArg: 1.021 ± 0.0
1.532AspSer: 1.532 ± 0.0
1.021AspThr: 1.021 ± 0.0
3.575AspVal: 3.575 ± 0.0
0.0AspTrp: 0.0 ± 0.0
2.043AspTyr: 2.043 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.064GluAla: 3.064 ± 0.0
2.554GluCys: 2.554 ± 0.0
2.554GluAsp: 2.554 ± 0.0
3.064GluGlu: 3.064 ± 0.0
3.575GluPhe: 3.575 ± 0.0
2.043GluGly: 2.043 ± 0.0
1.532GluHis: 1.532 ± 0.0
3.575GluIle: 3.575 ± 0.0
2.043GluLys: 2.043 ± 0.0
6.639GluLeu: 6.639 ± 0.0
1.021GluMet: 1.021 ± 0.0
3.064GluAsn: 3.064 ± 0.0
3.064GluPro: 3.064 ± 0.0
3.064GluGln: 3.064 ± 0.0
2.554GluArg: 2.554 ± 0.0
2.554GluSer: 2.554 ± 0.0
2.554GluThr: 2.554 ± 0.0
3.064GluVal: 3.064 ± 0.0
1.021GluTrp: 1.021 ± 0.0
2.043GluTyr: 2.043 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.064PheAla: 3.064 ± 0.0
3.064PheCys: 3.064 ± 0.0
2.554PheAsp: 2.554 ± 0.0
2.554PheGlu: 2.554 ± 0.0
2.554PhePhe: 2.554 ± 0.0
1.021PheGly: 1.021 ± 0.0
0.0PheHis: 0.0 ± 0.0
6.639PheIle: 6.639 ± 0.0
4.597PheLys: 4.597 ± 0.0
4.597PheLeu: 4.597 ± 0.0
1.532PheMet: 1.532 ± 0.0
1.532PheAsn: 1.532 ± 0.0
3.064PhePro: 3.064 ± 0.0
2.554PheGln: 2.554 ± 0.0
2.043PheArg: 2.043 ± 0.0
2.043PheSer: 2.043 ± 0.0
4.086PheThr: 4.086 ± 0.0
4.597PheVal: 4.597 ± 0.0
1.021PheTrp: 1.021 ± 0.0
1.532PheTyr: 1.532 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.575GlyAla: 3.575 ± 0.0
1.532GlyCys: 1.532 ± 0.0
4.086GlyAsp: 4.086 ± 0.0
3.575GlyGlu: 3.575 ± 0.0
1.532GlyPhe: 1.532 ± 0.0
2.043GlyGly: 2.043 ± 0.0
0.511GlyHis: 0.511 ± 0.0
5.107GlyIle: 5.107 ± 0.0
5.107GlyLys: 5.107 ± 0.0
7.15GlyLeu: 7.15 ± 0.0
1.021GlyMet: 1.021 ± 0.0
2.554GlyAsn: 2.554 ± 0.0
1.021GlyPro: 1.021 ± 0.0
0.511GlyGln: 0.511 ± 0.0
2.043GlyArg: 2.043 ± 0.0
4.597GlySer: 4.597 ± 0.0
2.554GlyThr: 2.554 ± 0.0
3.064GlyVal: 3.064 ± 0.0
2.043GlyTrp: 2.043 ± 0.0
1.532GlyTyr: 1.532 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.554HisAla: 2.554 ± 0.0
0.511HisCys: 0.511 ± 0.0
2.043HisAsp: 2.043 ± 0.0
1.021HisGlu: 1.021 ± 0.0
1.532HisPhe: 1.532 ± 0.0
2.043HisGly: 2.043 ± 0.0
0.511HisHis: 0.511 ± 0.0
0.511HisIle: 0.511 ± 0.0
1.532HisLys: 1.532 ± 0.0
1.532HisLeu: 1.532 ± 0.0
0.511HisMet: 0.511 ± 0.0
0.0HisAsn: 0.0 ± 0.0
2.554HisPro: 2.554 ± 0.0
2.554HisGln: 2.554 ± 0.0
0.511HisArg: 0.511 ± 0.0
2.043HisSer: 2.043 ± 0.0
2.043HisThr: 2.043 ± 0.0
1.021HisVal: 1.021 ± 0.0
0.0HisTrp: 0.0 ± 0.0
1.021HisTyr: 1.021 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.597IleAla: 4.597 ± 0.0
1.532IleCys: 1.532 ± 0.0
0.511IleAsp: 0.511 ± 0.0
4.086IleGlu: 4.086 ± 0.0
3.575IlePhe: 3.575 ± 0.0
2.554IleGly: 2.554 ± 0.0
2.554IleHis: 2.554 ± 0.0
4.086IleIle: 4.086 ± 0.0
2.043IleLys: 2.043 ± 0.0
6.639IleLeu: 6.639 ± 0.0
0.511IleMet: 0.511 ± 0.0
6.129IleAsn: 6.129 ± 0.0
0.0IlePro: 0.0 ± 0.0
4.597IleGln: 4.597 ± 0.0
3.575IleArg: 3.575 ± 0.0
5.618IleSer: 5.618 ± 0.0
3.064IleThr: 3.064 ± 0.0
3.064IleVal: 3.064 ± 0.0
0.0IleTrp: 0.0 ± 0.0
2.554IleTyr: 2.554 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.043LysAla: 2.043 ± 0.0
1.021LysCys: 1.021 ± 0.0
2.043LysAsp: 2.043 ± 0.0
2.043LysGlu: 2.043 ± 0.0
2.043LysPhe: 2.043 ± 0.0
2.554LysGly: 2.554 ± 0.0
2.043LysHis: 2.043 ± 0.0
4.086LysIle: 4.086 ± 0.0
2.554LysLys: 2.554 ± 0.0
5.107LysLeu: 5.107 ± 0.0
0.511LysMet: 0.511 ± 0.0
1.532LysAsn: 1.532 ± 0.0
3.064LysPro: 3.064 ± 0.0
0.511LysGln: 0.511 ± 0.0
2.554LysArg: 2.554 ± 0.0
4.597LysSer: 4.597 ± 0.0
2.043LysThr: 2.043 ± 0.0
3.575LysVal: 3.575 ± 0.0
0.511LysTrp: 0.511 ± 0.0
4.086LysTyr: 4.086 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.639LeuAla: 6.639 ± 0.0
4.086LeuCys: 4.086 ± 0.0
6.129LeuAsp: 6.129 ± 0.0
6.129LeuGlu: 6.129 ± 0.0
8.172LeuPhe: 8.172 ± 0.0
3.575LeuGly: 3.575 ± 0.0
5.107LeuHis: 5.107 ± 0.0
3.064LeuIle: 3.064 ± 0.0
2.043LeuLys: 2.043 ± 0.0
11.236LeuLeu: 11.236 ± 0.0
2.554LeuMet: 2.554 ± 0.0
4.086LeuAsn: 4.086 ± 0.0
4.597LeuPro: 4.597 ± 0.0
2.043LeuGln: 2.043 ± 0.0
6.639LeuArg: 6.639 ± 0.0
7.661LeuSer: 7.661 ± 0.0
7.661LeuThr: 7.661 ± 0.0
9.193LeuVal: 9.193 ± 0.0
0.511LeuTrp: 0.511 ± 0.0
2.043LeuTyr: 2.043 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.021MetAla: 1.021 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.511MetAsp: 0.511 ± 0.0
3.064MetGlu: 3.064 ± 0.0
1.021MetPhe: 1.021 ± 0.0
1.021MetGly: 1.021 ± 0.0
0.511MetHis: 0.511 ± 0.0
1.532MetIle: 1.532 ± 0.0
1.021MetLys: 1.021 ± 0.0
2.043MetLeu: 2.043 ± 0.0
0.0MetMet: 0.0 ± 0.0
0.511MetAsn: 0.511 ± 0.0
0.0MetPro: 0.0 ± 0.0
2.043MetGln: 2.043 ± 0.0
2.043MetArg: 2.043 ± 0.0
0.511MetSer: 0.511 ± 0.0
2.554MetThr: 2.554 ± 0.0
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.511MetTyr: 0.511 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.043AsnAla: 2.043 ± 0.0
1.021AsnCys: 1.021 ± 0.0
2.043AsnAsp: 2.043 ± 0.0
1.021AsnGlu: 1.021 ± 0.0
2.554AsnPhe: 2.554 ± 0.0
3.575AsnGly: 3.575 ± 0.0
1.021AsnHis: 1.021 ± 0.0
2.043AsnIle: 2.043 ± 0.0
1.532AsnLys: 1.532 ± 0.0
4.597AsnLeu: 4.597 ± 0.0
1.021AsnMet: 1.021 ± 0.0
1.532AsnAsn: 1.532 ± 0.0
2.043AsnPro: 2.043 ± 0.0
0.511AsnGln: 0.511 ± 0.0
3.064AsnArg: 3.064 ± 0.0
6.639AsnSer: 6.639 ± 0.0
3.064AsnThr: 3.064 ± 0.0
3.575AsnVal: 3.575 ± 0.0
1.021AsnTrp: 1.021 ± 0.0
3.064AsnTyr: 3.064 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.021ProAla: 1.021 ± 0.0
0.0ProCys: 0.0 ± 0.0
1.532ProAsp: 1.532 ± 0.0
1.532ProGlu: 1.532 ± 0.0
3.064ProPhe: 3.064 ± 0.0
4.597ProGly: 4.597 ± 0.0
1.532ProHis: 1.532 ± 0.0
2.043ProIle: 2.043 ± 0.0
2.043ProLys: 2.043 ± 0.0
4.597ProLeu: 4.597 ± 0.0
0.0ProMet: 0.0 ± 0.0
1.021ProAsn: 1.021 ± 0.0
3.064ProPro: 3.064 ± 0.0
2.554ProGln: 2.554 ± 0.0
3.575ProArg: 3.575 ± 0.0
4.597ProSer: 4.597 ± 0.0
1.021ProThr: 1.021 ± 0.0
4.597ProVal: 4.597 ± 0.0
0.0ProTrp: 0.0 ± 0.0
2.043ProTyr: 2.043 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.064GlnAla: 3.064 ± 0.0
1.532GlnCys: 1.532 ± 0.0
0.511GlnAsp: 0.511 ± 0.0
1.021GlnGlu: 1.021 ± 0.0
2.043GlnPhe: 2.043 ± 0.0
2.554GlnGly: 2.554 ± 0.0
0.511GlnHis: 0.511 ± 0.0
2.043GlnIle: 2.043 ± 0.0
1.532GlnLys: 1.532 ± 0.0
2.043GlnLeu: 2.043 ± 0.0
2.554GlnMet: 2.554 ± 0.0
1.021GlnAsn: 1.021 ± 0.0
1.532GlnPro: 1.532 ± 0.0
0.511GlnGln: 0.511 ± 0.0
1.021GlnArg: 1.021 ± 0.0
4.597GlnSer: 4.597 ± 0.0
2.043GlnThr: 2.043 ± 0.0
1.532GlnVal: 1.532 ± 0.0
0.511GlnTrp: 0.511 ± 0.0
3.064GlnTyr: 3.064 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.086ArgAla: 4.086 ± 0.0
1.532ArgCys: 1.532 ± 0.0
2.554ArgAsp: 2.554 ± 0.0
2.043ArgGlu: 2.043 ± 0.0
3.064ArgPhe: 3.064 ± 0.0
1.532ArgGly: 1.532 ± 0.0
0.511ArgHis: 0.511 ± 0.0
3.575ArgIle: 3.575 ± 0.0
2.554ArgLys: 2.554 ± 0.0
5.618ArgLeu: 5.618 ± 0.0
1.021ArgMet: 1.021 ± 0.0
2.043ArgAsn: 2.043 ± 0.0
1.532ArgPro: 1.532 ± 0.0
2.043ArgGln: 2.043 ± 0.0
1.532ArgArg: 1.532 ± 0.0
4.086ArgSer: 4.086 ± 0.0
3.064ArgThr: 3.064 ± 0.0
5.618ArgVal: 5.618 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
2.554ArgTyr: 2.554 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.107SerAla: 5.107 ± 0.0
1.021SerCys: 1.021 ± 0.0
2.554SerAsp: 2.554 ± 0.0
2.554SerGlu: 2.554 ± 0.0
4.597SerPhe: 4.597 ± 0.0
7.15SerGly: 7.15 ± 0.0
2.043SerHis: 2.043 ± 0.0
2.043SerIle: 2.043 ± 0.0
5.618SerLys: 5.618 ± 0.0
7.661SerLeu: 7.661 ± 0.0
1.532SerMet: 1.532 ± 0.0
4.597SerAsn: 4.597 ± 0.0
3.575SerPro: 3.575 ± 0.0
3.064SerGln: 3.064 ± 0.0
3.064SerArg: 3.064 ± 0.0
9.704SerSer: 9.704 ± 0.0
4.086SerThr: 4.086 ± 0.0
5.107SerVal: 5.107 ± 0.0
3.064SerTrp: 3.064 ± 0.0
5.618SerTyr: 5.618 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.575ThrAla: 3.575 ± 0.0
0.511ThrCys: 0.511 ± 0.0
3.064ThrAsp: 3.064 ± 0.0
2.554ThrGlu: 2.554 ± 0.0
2.554ThrPhe: 2.554 ± 0.0
3.575ThrGly: 3.575 ± 0.0
1.021ThrHis: 1.021 ± 0.0
5.107ThrIle: 5.107 ± 0.0
3.064ThrLys: 3.064 ± 0.0
6.639ThrLeu: 6.639 ± 0.0
0.0ThrMet: 0.0 ± 0.0
3.575ThrAsn: 3.575 ± 0.0
0.511ThrPro: 0.511 ± 0.0
1.532ThrGln: 1.532 ± 0.0
1.532ThrArg: 1.532 ± 0.0
4.597ThrSer: 4.597 ± 0.0
4.086ThrThr: 4.086 ± 0.0
2.043ThrVal: 2.043 ± 0.0
1.021ThrTrp: 1.021 ± 0.0
1.532ThrTyr: 1.532 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.618ValAla: 5.618 ± 0.0
4.086ValCys: 4.086 ± 0.0
1.021ValAsp: 1.021 ± 0.0
7.15ValGlu: 7.15 ± 0.0
4.086ValPhe: 4.086 ± 0.0
5.107ValGly: 5.107 ± 0.0
2.043ValHis: 2.043 ± 0.0
4.597ValIle: 4.597 ± 0.0
3.064ValLys: 3.064 ± 0.0
6.129ValLeu: 6.129 ± 0.0
1.021ValMet: 1.021 ± 0.0
4.597ValAsn: 4.597 ± 0.0
2.554ValPro: 2.554 ± 0.0
1.532ValGln: 1.532 ± 0.0
5.107ValArg: 5.107 ± 0.0
4.086ValSer: 4.086 ± 0.0
1.021ValThr: 1.021 ± 0.0
4.086ValVal: 4.086 ± 0.0
0.511ValTrp: 0.511 ± 0.0
2.043ValTyr: 2.043 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
2.554TrpAla: 2.554 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.511TrpGlu: 0.511 ± 0.0
0.511TrpPhe: 0.511 ± 0.0
1.021TrpGly: 1.021 ± 0.0
0.511TrpHis: 0.511 ± 0.0
0.511TrpIle: 0.511 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.021TrpLeu: 1.021 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.511TrpAsn: 0.511 ± 0.0
0.511TrpPro: 0.511 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.511TrpArg: 0.511 ± 0.0
1.532TrpSer: 1.532 ± 0.0
0.511TrpThr: 0.511 ± 0.0
1.021TrpVal: 1.021 ± 0.0
0.511TrpTrp: 0.511 ± 0.0
0.511TrpTyr: 0.511 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.064TyrAla: 3.064 ± 0.0
2.043TyrCys: 2.043 ± 0.0
3.575TyrAsp: 3.575 ± 0.0
2.554TyrGlu: 2.554 ± 0.0
2.043TyrPhe: 2.043 ± 0.0
4.086TyrGly: 4.086 ± 0.0
1.021TyrHis: 1.021 ± 0.0
1.532TyrIle: 1.532 ± 0.0
1.532TyrLys: 1.532 ± 0.0
2.554TyrLeu: 2.554 ± 0.0
1.532TyrMet: 1.532 ± 0.0
1.021TyrAsn: 1.021 ± 0.0
3.064TyrPro: 3.064 ± 0.0
2.554TyrGln: 2.554 ± 0.0
3.064TyrArg: 3.064 ± 0.0
4.086TyrSer: 4.086 ± 0.0
1.021TyrThr: 1.021 ± 0.0
0.511TyrVal: 0.511 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
2.043TyrTyr: 2.043 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (1959 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski