Leptotrichia sp. oral taxon 215 str. W9775

Taxonomy: cellular organisms; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; unclassified Leptotrichia; Leptotrichia sp. oral taxon 215

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2260 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U2RDX1|U2RDX1_9FUSO Uncharacterized protein OS=Leptotrichia sp. oral taxon 215 str. W9775 OX=1321779 GN=HMPREF1984_01355 PE=4 SV=1
MM1 pKa = 7.24TKK3 pKa = 10.53NEE5 pKa = 4.29IANMTNGKK13 pKa = 9.6LKK15 pKa = 10.93GIARR19 pKa = 11.84QISTNYY25 pKa = 10.07EE26 pKa = 3.55LGLRR30 pKa = 11.84EE31 pKa = 4.31DD32 pKa = 5.37DD33 pKa = 4.94IIILEE38 pKa = 4.38KK39 pKa = 10.97AEE41 pKa = 3.91SWTDD45 pKa = 3.03GGEE48 pKa = 3.93FTVEE52 pKa = 3.62NEE54 pKa = 3.78RR55 pKa = 11.84EE56 pKa = 4.03YY57 pKa = 10.76EE58 pKa = 4.18YY59 pKa = 10.84MFYY62 pKa = 10.54CVNEE66 pKa = 4.4CPVHH70 pKa = 7.15IVDD73 pKa = 4.68YY74 pKa = 10.32EE75 pKa = 4.2NEE77 pKa = 4.22EE78 pKa = 3.9EE79 pKa = 4.36TEE81 pKa = 3.89ILGATDD87 pKa = 4.31CEE89 pKa = 4.41AEE91 pKa = 4.24KK92 pKa = 10.64EE93 pKa = 4.4VLVAAGTKK101 pKa = 9.82FRR103 pKa = 11.84IISVSTDD110 pKa = 2.62EE111 pKa = 5.62DD112 pKa = 4.37YY113 pKa = 11.85EE114 pKa = 4.32EE115 pKa = 3.92MGYY118 pKa = 11.13YY119 pKa = 10.29SIDD122 pKa = 3.42VEE124 pKa = 4.55YY125 pKa = 10.74MNN127 pKa = 5.51

Molecular weight: 14.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U2RJ81|U2RJ81_9FUSO DAK2 domain fusion protein YloV OS=Leptotrichia sp. oral taxon 215 str. W9775 OX=1321779 GN=HMPREF1984_00401 PE=4 SV=1
MM1 pKa = 7.94RR2 pKa = 11.84KK3 pKa = 9.33RR4 pKa = 11.84RR5 pKa = 11.84TLSGIGIAALFATGGAGNLFTAFVLMTISLTCLYY39 pKa = 10.08FGKK42 pKa = 10.63AFDD45 pKa = 3.87RR46 pKa = 11.84KK47 pKa = 7.21TWEE50 pKa = 3.73

Molecular weight: 5.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2260

0

2260

690179

39

2995

305.4

34.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.413 ± 0.068

0.671 ± 0.017

5.24 ± 0.04

8.553 ± 0.1

4.773 ± 0.047

6.697 ± 0.093

1.271 ± 0.018

9.154 ± 0.057

10.04 ± 0.087

8.67 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.574 ± 0.026

6.375 ± 0.067

2.631 ± 0.027

2.224 ± 0.02

3.477 ± 0.035

5.833 ± 0.048

5.042 ± 0.078

6.346 ± 0.044

0.72 ± 0.018

4.297 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski