Treponema lecithinolyticum ATCC 700332

Taxonomy: cellular organisms; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema lecithinolyticum

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2175 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U2LWK6|U2LWK6_TRELE Uncharacterized protein OS=Treponema lecithinolyticum ATCC 700332 OX=1321815 GN=HMPREF9193_00595 PE=4 SV=1
MM1 pKa = 7.41QIEE4 pKa = 4.25KK5 pKa = 10.31NKK7 pKa = 10.18RR8 pKa = 11.84VSIDD12 pKa = 3.33YY13 pKa = 8.78TLKK16 pKa = 11.02DD17 pKa = 3.86EE18 pKa = 4.69NGEE21 pKa = 3.98ILDD24 pKa = 3.8SSEE27 pKa = 3.77NGTPLEE33 pKa = 4.16YY34 pKa = 10.89VHH36 pKa = 7.11GYY38 pKa = 10.59GNLIYY43 pKa = 10.55GLEE46 pKa = 4.12KK47 pKa = 10.53EE48 pKa = 5.14LEE50 pKa = 4.31GKK52 pKa = 9.37QAGDD56 pKa = 3.67SFSLSVAPAEE66 pKa = 4.49AYY68 pKa = 10.28GEE70 pKa = 4.12YY71 pKa = 10.49SQDD74 pKa = 4.26LVVTLPKK81 pKa = 10.95SNFEE85 pKa = 4.31SNADD89 pKa = 3.03ITVGMKK95 pKa = 9.99FEE97 pKa = 5.06AGSGLHH103 pKa = 5.76NRR105 pKa = 11.84VVTVTKK111 pKa = 10.63VDD113 pKa = 3.56GDD115 pKa = 4.39NITVDD120 pKa = 4.03ANHH123 pKa = 6.48EE124 pKa = 4.17LAGKK128 pKa = 7.7TLFFDD133 pKa = 3.54VTVNDD138 pKa = 3.36VRR140 pKa = 11.84DD141 pKa = 3.83ASDD144 pKa = 3.59EE145 pKa = 4.32EE146 pKa = 4.25INEE149 pKa = 4.57CIGGCSCGSCSSGCGGSDD167 pKa = 3.55GGCSSGCCGCGFF179 pKa = 4.31

Molecular weight: 18.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U2KJQ9|U2KJQ9_TRELE Helicase protein OS=Treponema lecithinolyticum ATCC 700332 OX=1321815 GN=HMPREF9193_01458 PE=4 SV=1
MM1 pKa = 7.59PPCRR5 pKa = 11.84HH6 pKa = 5.12SVGRR10 pKa = 11.84QAEE13 pKa = 4.08RR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84LIINNDD22 pKa = 2.92CCLRR26 pKa = 11.84IKK28 pKa = 10.69SKK30 pKa = 11.24SLVQKK35 pKa = 10.39LQFPHH40 pKa = 4.56QTQYY44 pKa = 11.31FGG46 pKa = 3.68

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2175

0

2175

736040

39

2136

338.4

37.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.075 ± 0.06

1.503 ± 0.023

5.122 ± 0.041

6.06 ± 0.058

4.971 ± 0.049

6.639 ± 0.054

1.687 ± 0.019

6.766 ± 0.052

7.006 ± 0.051

9.388 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.296 ± 0.026

4.466 ± 0.035

3.667 ± 0.028

3.407 ± 0.032

4.371 ± 0.041

6.589 ± 0.04

5.719 ± 0.04

6.624 ± 0.041

0.981 ± 0.018

3.661 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski