Chrysochromulina parva virophage Larry

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Maveriviricetes; Priklausovirales; Lavidaviridae; unclassified Lavidaviridae

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 19 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P1LUE8|A0A4P1LUE8_9VIRU Tyrosine recombinase OS=Chrysochromulina parva virophage Larry OX=2420056 PE=4 SV=1
MM1 pKa = 7.33TVPFSTQYY9 pKa = 10.72YY10 pKa = 8.13PEE12 pKa = 4.87PSGGADD18 pKa = 3.22LTANSVDD25 pKa = 3.14ASHH28 pKa = 6.94IVNGSITTADD38 pKa = 3.49IADD41 pKa = 3.72HH42 pKa = 6.53AVTYY46 pKa = 10.73DD47 pKa = 3.93KK48 pKa = 10.94IAVNAVTNTRR58 pKa = 11.84IANNAVTHH66 pKa = 6.46AKK68 pKa = 8.76MASDD72 pKa = 5.25AIEE75 pKa = 3.82THH77 pKa = 6.19NIKK80 pKa = 10.74DD81 pKa = 4.51AMVTDD86 pKa = 4.45AKK88 pKa = 10.5LAKK91 pKa = 9.56IKK93 pKa = 10.7VMLMIHH99 pKa = 6.27NSVDD103 pKa = 3.28STVNLNYY110 pKa = 10.43GVYY113 pKa = 10.56LRR115 pKa = 11.84DD116 pKa = 3.56NNTSVLYY123 pKa = 9.37FAYY126 pKa = 9.0PAQPIPPGSSHH137 pKa = 7.03SLLLNLSSSATIVEE151 pKa = 4.29VQVDD155 pKa = 3.62SDD157 pKa = 4.36GITVVAHH164 pKa = 5.73EE165 pKa = 4.78VYY167 pKa = 10.77SGGTEE172 pKa = 4.32TEE174 pKa = 4.15WQDD177 pKa = 3.26DD178 pKa = 3.93TLKK181 pKa = 9.81FTRR184 pKa = 11.84NAGADD189 pKa = 3.59NIQIAFGVSDD199 pKa = 3.48NN200 pKa = 3.98

Molecular weight: 21.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A499SAH4|A0A499SAH4_9VIRU S3H helicase with TVpol domain OS=Chrysochromulina parva virophage Larry OX=2420056 PE=4 SV=1
MM1 pKa = 7.81AEE3 pKa = 5.04DD4 pKa = 4.34IPTGGWPVRR13 pKa = 11.84DD14 pKa = 3.41PFVPKK19 pKa = 10.02MEE21 pKa = 4.1EE22 pKa = 3.83TKK24 pKa = 10.52DD25 pKa = 3.22IRR27 pKa = 11.84DD28 pKa = 3.38ARR30 pKa = 11.84SRR32 pKa = 11.84EE33 pKa = 3.9MRR35 pKa = 11.84AMMATPHH42 pKa = 5.43GRR44 pKa = 11.84EE45 pKa = 4.02MIEE48 pKa = 3.55TRR50 pKa = 11.84ARR52 pKa = 11.84QTRR55 pKa = 11.84AMMATPRR62 pKa = 11.84GRR64 pKa = 11.84EE65 pKa = 3.33EE66 pKa = 3.51AAARR70 pKa = 11.84EE71 pKa = 4.02AAAAAEE77 pKa = 4.27EE78 pKa = 4.21EE79 pKa = 4.55RR80 pKa = 11.84GAEE83 pKa = 4.08AARR86 pKa = 11.84EE87 pKa = 4.14GQRR90 pKa = 11.84RR91 pKa = 11.84VEE93 pKa = 4.3DD94 pKa = 3.51YY95 pKa = 10.79FRR97 pKa = 11.84EE98 pKa = 3.95QRR100 pKa = 11.84AQQLRR105 pKa = 11.84AEE107 pKa = 4.36QQRR110 pKa = 11.84VEE112 pKa = 4.06QRR114 pKa = 11.84AEE116 pKa = 3.56QRR118 pKa = 11.84MLMRR122 pKa = 11.84QLPYY126 pKa = 10.69VEE128 pKa = 4.79AALGAGPSTSNSDD141 pKa = 3.38APRR144 pKa = 11.84PSPEE148 pKa = 3.54QPARR152 pKa = 11.84RR153 pKa = 11.84TGIIPYY159 pKa = 10.0LSNILNIRR167 pKa = 11.84QRR169 pKa = 11.84PRR171 pKa = 11.84RR172 pKa = 11.84RR173 pKa = 11.84NVRR176 pKa = 11.84PNDD179 pKa = 3.69DD180 pKa = 3.86LTGLDD185 pKa = 3.47

Molecular weight: 21.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

19

0

19

6851

102

1931

360.6

40.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.736 ± 0.863

0.774 ± 0.284

6.656 ± 0.349

6.014 ± 0.451

3.839 ± 0.494

6.028 ± 0.677

1.825 ± 0.202

6.422 ± 0.643

5.24 ± 1.469

7.371 ± 0.422

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.715 ± 0.186

5.999 ± 0.354

5.693 ± 0.811

3.707 ± 0.309

5.926 ± 0.788

6.262 ± 0.329

7.97 ± 0.642

5.211 ± 0.482

0.613 ± 0.12

3.999 ± 0.292
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski