Amino acid dipepetide frequency for Beihai mantis shrimp virus 4

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.83AlaAla: 5.83 ± 0.982
0.686AlaCys: 0.686 ± 0.359
3.429AlaAsp: 3.429 ± 1.086
3.772AlaGlu: 3.772 ± 0.33
3.772AlaPhe: 3.772 ± 0.907
5.144AlaGly: 5.144 ± 0.188
0.343AlaHis: 0.343 ± 0.18
2.401AlaIle: 2.401 ± 0.104
3.429AlaLys: 3.429 ± 1.663
5.83AlaLeu: 5.83 ± 1.901
2.058AlaMet: 2.058 ± 0.075
1.715AlaAsn: 1.715 ± 0.255
3.086AlaPro: 3.086 ± 1.266
3.429AlaGln: 3.429 ± 0.067
2.743AlaArg: 2.743 ± 0.86
4.458AlaSer: 4.458 ± 0.548
3.429AlaThr: 3.429 ± 0.067
2.743AlaVal: 2.743 ± 0.86
0.686AlaTrp: 0.686 ± 0.217
1.029AlaTyr: 1.029 ± 0.614
0.0AlaXaa: 0.0 ± 0.0
Cys
1.372CysAla: 1.372 ± 0.142
1.029CysCys: 1.029 ± 0.539
1.715CysAsp: 1.715 ± 0.898
1.715CysGlu: 1.715 ± 0.898
1.029CysPhe: 1.029 ± 0.539
1.372CysGly: 1.372 ± 0.718
0.343CysHis: 0.343 ± 0.18
0.343CysIle: 0.343 ± 0.397
0.686CysLys: 0.686 ± 0.359
0.343CysLeu: 0.343 ± 0.18
1.029CysMet: 1.029 ± 0.539
0.686CysAsn: 0.686 ± 0.359
0.686CysPro: 0.686 ± 0.359
0.0CysGln: 0.0 ± 0.0
2.058CysArg: 2.058 ± 0.501
2.401CysSer: 2.401 ± 1.257
1.372CysThr: 1.372 ± 0.718
3.086CysVal: 3.086 ± 1.04
0.343CysTrp: 0.343 ± 0.18
0.686CysTyr: 0.686 ± 0.359
0.0CysXaa: 0.0 ± 0.0
Asp
2.401AspAla: 2.401 ± 0.104
1.715AspCys: 1.715 ± 0.898
4.458AspAsp: 4.458 ± 1.124
2.743AspGlu: 2.743 ± 0.293
3.772AspPhe: 3.772 ± 1.399
4.115AspGly: 4.115 ± 0.426
2.743AspHis: 2.743 ± 0.293
2.401AspIle: 2.401 ± 0.104
2.743AspLys: 2.743 ± 0.86
5.144AspLeu: 5.144 ± 1.541
1.715AspMet: 1.715 ± 0.831
2.401AspAsn: 2.401 ± 1.049
3.772AspPro: 3.772 ± 0.33
1.029AspGln: 1.029 ± 0.038
2.743AspArg: 2.743 ± 1.446
4.458AspSer: 4.458 ± 0.605
4.458AspThr: 4.458 ± 1.701
7.202AspVal: 7.202 ± 0.889
1.372AspTrp: 1.372 ± 0.718
1.372AspTyr: 1.372 ± 0.142
0.0AspXaa: 0.0 ± 0.0
Glu
2.058GluAla: 2.058 ± 1.078
1.372GluCys: 1.372 ± 0.718
3.429GluAsp: 3.429 ± 0.643
4.458GluGlu: 4.458 ± 0.605
2.058GluPhe: 2.058 ± 1.228
4.801GluGly: 4.801 ± 0.944
1.029GluHis: 1.029 ± 0.038
3.429GluIle: 3.429 ± 1.086
3.429GluLys: 3.429 ± 1.22
2.401GluLeu: 2.401 ± 0.104
1.715GluMet: 1.715 ± 0.322
5.144GluAsn: 5.144 ± 0.188
1.715GluPro: 1.715 ± 0.322
1.715GluGln: 1.715 ± 0.831
0.686GluArg: 0.686 ± 0.217
3.772GluSer: 3.772 ± 0.823
2.743GluThr: 2.743 ± 0.86
5.83GluVal: 5.83 ± 0.406
0.343GluTrp: 0.343 ± 0.18
3.429GluTyr: 3.429 ± 0.643
0.0GluXaa: 0.0 ± 0.0
Phe
2.743PheAla: 2.743 ± 0.284
0.343PheCys: 0.343 ± 0.18
3.429PheAsp: 3.429 ± 1.086
3.086PheGlu: 3.086 ± 0.113
1.715PhePhe: 1.715 ± 0.255
2.058PheGly: 2.058 ± 0.652
0.686PheHis: 0.686 ± 0.217
2.743PheIle: 2.743 ± 0.284
2.058PheLys: 2.058 ± 0.075
4.801PheLeu: 4.801 ± 0.368
0.686PheMet: 0.686 ± 0.794
2.058PheAsn: 2.058 ± 0.075
3.429PhePro: 3.429 ± 0.067
1.029PheGln: 1.029 ± 0.038
1.715PheArg: 1.715 ± 0.831
5.144PheSer: 5.144 ± 1.541
3.429PheThr: 3.429 ± 2.24
3.086PheVal: 3.086 ± 0.113
0.686PheTrp: 0.686 ± 0.359
1.715PheTyr: 1.715 ± 0.255
0.0PheXaa: 0.0 ± 0.0
Gly
2.401GlyAla: 2.401 ± 1.049
2.058GlyCys: 2.058 ± 0.501
5.144GlyAsp: 5.144 ± 0.188
2.401GlyGlu: 2.401 ± 0.472
3.429GlyPhe: 3.429 ± 1.086
3.086GlyGly: 3.086 ± 0.69
1.372GlyHis: 1.372 ± 0.142
5.144GlyIle: 5.144 ± 0.765
4.458GlyLys: 4.458 ± 1.182
4.115GlyLeu: 4.115 ± 1.002
2.401GlyMet: 2.401 ± 0.681
2.401GlyAsn: 2.401 ± 0.104
1.372GlyPro: 1.372 ± 1.588
1.372GlyGln: 1.372 ± 0.435
3.429GlyArg: 3.429 ± 1.22
3.429GlySer: 3.429 ± 0.643
4.458GlyThr: 4.458 ± 0.029
6.173GlyVal: 6.173 ± 1.379
0.0GlyTrp: 0.0 ± 0.0
2.058GlyTyr: 2.058 ± 0.501
0.0GlyXaa: 0.0 ± 0.0
His
1.029HisAla: 1.029 ± 0.038
0.686HisCys: 0.686 ± 0.359
1.715HisAsp: 1.715 ± 0.898
1.029HisGlu: 1.029 ± 0.539
1.372HisPhe: 1.372 ± 0.435
2.058HisGly: 2.058 ± 0.501
0.0HisHis: 0.0 ± 0.0
2.058HisIle: 2.058 ± 0.501
0.686HisLys: 0.686 ± 0.359
1.372HisLeu: 1.372 ± 0.142
0.343HisMet: 0.343 ± 0.18
1.372HisAsn: 1.372 ± 0.718
2.058HisPro: 2.058 ± 0.501
1.715HisGln: 1.715 ± 0.322
2.058HisArg: 2.058 ± 1.078
2.401HisSer: 2.401 ± 0.104
0.686HisThr: 0.686 ± 0.217
2.743HisVal: 2.743 ± 0.86
0.686HisTrp: 0.686 ± 0.217
0.343HisTyr: 0.343 ± 0.18
0.0HisXaa: 0.0 ± 0.0
Ile
4.115IleAla: 4.115 ± 0.727
1.715IleCys: 1.715 ± 0.898
4.801IleAsp: 4.801 ± 0.368
2.058IleGlu: 2.058 ± 0.075
2.058IlePhe: 2.058 ± 0.652
2.743IleGly: 2.743 ± 0.293
1.372IleHis: 1.372 ± 0.718
2.058IleIle: 2.058 ± 0.652
2.401IleLys: 2.401 ± 1.257
2.743IleLeu: 2.743 ± 0.284
1.372IleMet: 1.372 ± 0.142
1.715IleAsn: 1.715 ± 0.831
3.086IlePro: 3.086 ± 0.69
1.029IleGln: 1.029 ± 0.038
2.058IleArg: 2.058 ± 0.652
6.173IleSer: 6.173 ± 2.532
4.458IleThr: 4.458 ± 1.701
4.801IleVal: 4.801 ± 0.785
1.029IleTrp: 1.029 ± 0.038
0.686IleTyr: 0.686 ± 0.359
0.0IleXaa: 0.0 ± 0.0
Lys
3.086LysAla: 3.086 ± 0.113
1.029LysCys: 1.029 ± 0.539
4.801LysAsp: 4.801 ± 0.785
1.715LysGlu: 1.715 ± 0.322
1.029LysPhe: 1.029 ± 0.539
3.429LysGly: 3.429 ± 0.51
0.686LysHis: 0.686 ± 0.359
3.086LysIle: 3.086 ± 0.113
1.029LysLys: 1.029 ± 0.539
4.458LysLeu: 4.458 ± 0.029
1.372LysMet: 1.372 ± 0.718
1.715LysAsn: 1.715 ± 0.898
2.058LysPro: 2.058 ± 0.075
1.029LysGln: 1.029 ± 0.539
3.086LysArg: 3.086 ± 1.617
4.458LysSer: 4.458 ± 1.759
3.772LysThr: 3.772 ± 1.399
6.516LysVal: 6.516 ± 0.046
1.372LysTrp: 1.372 ± 1.011
2.058LysTyr: 2.058 ± 0.501
0.0LysXaa: 0.0 ± 0.0
Leu
3.429LeuAla: 3.429 ± 0.51
2.058LeuCys: 2.058 ± 1.078
3.429LeuAsp: 3.429 ± 0.643
4.801LeuGlu: 4.801 ± 1.362
2.743LeuPhe: 2.743 ± 0.293
3.429LeuGly: 3.429 ± 1.796
3.429LeuHis: 3.429 ± 1.796
4.801LeuIle: 4.801 ± 0.785
5.144LeuLys: 5.144 ± 2.118
5.83LeuLeu: 5.83 ± 1.324
1.715LeuMet: 1.715 ± 0.255
4.458LeuAsn: 4.458 ± 1.124
4.801LeuPro: 4.801 ± 2.098
1.715LeuGln: 1.715 ± 0.255
4.458LeuArg: 4.458 ± 1.701
8.916LeuSer: 8.916 ± 0.058
5.83LeuThr: 5.83 ± 1.559
6.173LeuVal: 6.173 ± 0.226
1.372LeuTrp: 1.372 ± 0.435
2.401LeuTyr: 2.401 ± 1.257
0.0LeuXaa: 0.0 ± 0.0
Met
1.029MetAla: 1.029 ± 0.038
1.029MetCys: 1.029 ± 0.539
1.029MetAsp: 1.029 ± 0.614
1.372MetGlu: 1.372 ± 0.142
2.058MetPhe: 2.058 ± 0.501
1.715MetGly: 1.715 ± 0.831
1.029MetHis: 1.029 ± 0.038
0.686MetIle: 0.686 ± 0.359
0.686MetLys: 0.686 ± 0.217
2.058MetLeu: 2.058 ± 0.501
1.715MetMet: 1.715 ± 0.365
0.686MetAsn: 0.686 ± 0.217
1.029MetPro: 1.029 ± 0.038
2.401MetGln: 2.401 ± 0.104
1.372MetArg: 1.372 ± 0.435
2.743MetSer: 2.743 ± 0.293
1.029MetThr: 1.029 ± 0.038
0.686MetVal: 0.686 ± 0.359
0.343MetTrp: 0.343 ± 0.18
0.686MetTyr: 0.686 ± 0.217
0.0MetXaa: 0.0 ± 0.0
Asn
2.401AsnAla: 2.401 ± 0.472
1.029AsnCys: 1.029 ± 0.539
1.715AsnAsp: 1.715 ± 0.255
3.086AsnGlu: 3.086 ± 0.69
1.029AsnPhe: 1.029 ± 0.614
0.686AsnGly: 0.686 ± 0.217
1.372AsnHis: 1.372 ± 0.718
2.401AsnIle: 2.401 ± 0.104
2.401AsnLys: 2.401 ± 0.472
3.086AsnLeu: 3.086 ± 1.266
1.029AsnMet: 1.029 ± 0.038
0.686AsnAsn: 0.686 ± 0.217
2.743AsnPro: 2.743 ± 0.293
0.686AsnGln: 0.686 ± 0.359
2.058AsnArg: 2.058 ± 0.501
3.772AsnSer: 3.772 ± 0.246
1.372AsnThr: 1.372 ± 0.142
4.801AsnVal: 4.801 ± 0.368
0.0AsnTrp: 0.0 ± 0.0
1.029AsnTyr: 1.029 ± 0.614
0.0AsnXaa: 0.0 ± 0.0
Pro
3.429ProAla: 3.429 ± 1.086
0.343ProCys: 0.343 ± 0.18
4.801ProAsp: 4.801 ± 0.785
4.115ProGlu: 4.115 ± 0.151
2.743ProPhe: 2.743 ± 2.022
1.029ProGly: 1.029 ± 0.614
0.686ProHis: 0.686 ± 0.217
2.058ProIle: 2.058 ± 1.228
2.743ProLys: 2.743 ± 0.284
3.772ProLeu: 3.772 ± 0.33
0.343ProMet: 0.343 ± 0.18
1.372ProAsn: 1.372 ± 0.142
2.058ProPro: 2.058 ± 0.501
3.429ProGln: 3.429 ± 0.643
2.743ProArg: 2.743 ± 1.446
2.743ProSer: 2.743 ± 0.284
4.115ProThr: 4.115 ± 0.727
2.401ProVal: 2.401 ± 0.104
0.343ProTrp: 0.343 ± 0.397
3.772ProTyr: 3.772 ± 0.246
0.0ProXaa: 0.0 ± 0.0
Gln
4.115GlnAla: 4.115 ± 0.426
0.686GlnCys: 0.686 ± 0.217
1.029GlnAsp: 1.029 ± 0.038
1.372GlnGlu: 1.372 ± 0.142
1.029GlnPhe: 1.029 ± 1.191
5.487GlnGly: 5.487 ± 1.738
0.686GlnHis: 0.686 ± 0.359
1.372GlnIle: 1.372 ± 0.142
1.715GlnLys: 1.715 ± 0.322
3.086GlnLeu: 3.086 ± 0.464
0.343GlnMet: 0.343 ± 0.18
1.029GlnAsn: 1.029 ± 0.539
1.372GlnPro: 1.372 ± 0.435
1.029GlnGln: 1.029 ± 0.539
1.715GlnArg: 1.715 ± 0.322
3.429GlnSer: 3.429 ± 0.643
1.715GlnThr: 1.715 ± 0.322
2.058GlnVal: 2.058 ± 0.652
0.0GlnTrp: 0.0 ± 0.0
1.372GlnTyr: 1.372 ± 0.435
0.0GlnXaa: 0.0 ± 0.0
Arg
2.743ArgAla: 2.743 ± 0.284
1.372ArgCys: 1.372 ± 0.142
2.058ArgAsp: 2.058 ± 0.652
1.715ArgGlu: 1.715 ± 0.255
1.029ArgPhe: 1.029 ± 0.038
3.429ArgGly: 3.429 ± 0.51
1.029ArgHis: 1.029 ± 0.539
4.115ArgIle: 4.115 ± 0.151
3.429ArgLys: 3.429 ± 1.796
4.458ArgLeu: 4.458 ± 0.029
0.0ArgMet: 0.0 ± 0.0
1.372ArgAsn: 1.372 ± 1.011
2.401ArgPro: 2.401 ± 0.681
1.715ArgGln: 1.715 ± 0.322
5.144ArgArg: 5.144 ± 0.388
3.086ArgSer: 3.086 ± 0.69
3.429ArgThr: 3.429 ± 0.067
6.173ArgVal: 6.173 ± 0.351
0.0ArgTrp: 0.0 ± 0.0
2.058ArgTyr: 2.058 ± 0.075
0.0ArgXaa: 0.0 ± 0.0
Ser
5.144SerAla: 5.144 ± 0.188
1.715SerCys: 1.715 ± 0.898
7.202SerAsp: 7.202 ± 0.889
3.429SerGlu: 3.429 ± 0.067
7.888SerPhe: 7.888 ± 1.249
6.859SerGly: 6.859 ± 1.863
3.086SerHis: 3.086 ± 1.617
5.487SerIle: 5.487 ± 1.162
4.801SerLys: 4.801 ± 0.368
7.888SerLeu: 7.888 ± 0.096
0.343SerMet: 0.343 ± 0.607
2.058SerAsn: 2.058 ± 0.652
3.772SerPro: 3.772 ± 0.246
3.429SerGln: 3.429 ± 1.086
2.743SerArg: 2.743 ± 0.86
7.545SerSer: 7.545 ± 0.661
6.859SerThr: 6.859 ± 0.443
6.173SerVal: 6.173 ± 1.956
0.686SerTrp: 0.686 ± 0.794
3.086SerTyr: 3.086 ± 1.843
0.0SerXaa: 0.0 ± 0.0
Thr
4.115ThrAla: 4.115 ± 0.151
0.686ThrCys: 0.686 ± 0.359
2.058ThrAsp: 2.058 ± 0.075
5.144ThrGlu: 5.144 ± 0.965
3.086ThrPhe: 3.086 ± 1.266
2.058ThrGly: 2.058 ± 0.652
1.715ThrHis: 1.715 ± 0.255
4.115ThrIle: 4.115 ± 1.304
4.115ThrLys: 4.115 ± 0.426
6.859ThrLeu: 6.859 ± 1.596
2.401ThrMet: 2.401 ± 0.472
2.743ThrAsn: 2.743 ± 0.293
1.715ThrPro: 1.715 ± 0.255
3.086ThrGln: 3.086 ± 1.04
2.401ThrArg: 2.401 ± 0.681
7.202ThrSer: 7.202 ± 1.417
4.115ThrThr: 4.115 ± 0.727
4.115ThrVal: 4.115 ± 0.426
0.686ThrTrp: 0.686 ± 0.217
3.086ThrTyr: 3.086 ± 0.69
0.0ThrXaa: 0.0 ± 0.0
Val
5.487ValAla: 5.487 ± 1.738
1.715ValCys: 1.715 ± 0.898
3.086ValAsp: 3.086 ± 0.113
6.516ValGlu: 6.516 ± 0.046
2.401ValPhe: 2.401 ± 0.104
4.458ValGly: 4.458 ± 1.182
3.086ValHis: 3.086 ± 0.464
2.058ValIle: 2.058 ± 0.075
4.458ValLys: 4.458 ± 1.182
8.23ValLeu: 8.23 ± 0.301
2.401ValMet: 2.401 ± 0.681
2.401ValAsn: 2.401 ± 0.104
4.458ValPro: 4.458 ± 0.548
3.086ValGln: 3.086 ± 1.266
5.144ValArg: 5.144 ± 0.965
11.317ValSer: 11.317 ± 2.72
5.144ValThr: 5.144 ± 0.188
4.115ValVal: 4.115 ± 1.304
0.343ValTrp: 0.343 ± 0.18
2.401ValTyr: 2.401 ± 1.257
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.686TrpAsp: 0.686 ± 0.359
0.686TrpGlu: 0.686 ± 0.217
0.343TrpPhe: 0.343 ± 0.18
0.0TrpGly: 0.0 ± 0.0
0.686TrpHis: 0.686 ± 0.359
0.343TrpIle: 0.343 ± 0.397
0.343TrpLys: 0.343 ± 0.18
1.715TrpLeu: 1.715 ± 0.255
0.686TrpMet: 0.686 ± 0.359
0.343TrpAsn: 0.343 ± 0.397
0.0TrpPro: 0.0 ± 0.0
1.029TrpGln: 1.029 ± 0.038
0.686TrpArg: 0.686 ± 0.217
1.372TrpSer: 1.372 ± 1.011
0.343TrpThr: 0.343 ± 0.18
1.029TrpVal: 1.029 ± 0.614
0.343TrpTrp: 0.343 ± 0.397
0.343TrpTyr: 0.343 ± 0.18
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.086TyrAla: 3.086 ± 1.04
1.029TyrCys: 1.029 ± 0.038
2.743TyrAsp: 2.743 ± 0.284
0.343TyrGlu: 0.343 ± 0.18
2.058TyrPhe: 2.058 ± 1.078
2.743TyrGly: 2.743 ± 0.293
1.029TyrHis: 1.029 ± 0.038
1.372TyrIle: 1.372 ± 0.142
1.029TyrLys: 1.029 ± 0.614
2.743TyrLeu: 2.743 ± 0.284
1.372TyrMet: 1.372 ± 1.011
1.029TyrAsn: 1.029 ± 0.539
3.429TyrPro: 3.429 ± 0.067
0.686TyrGln: 0.686 ± 0.217
1.715TyrArg: 1.715 ± 0.831
1.715TyrSer: 1.715 ± 0.255
2.743TyrThr: 2.743 ± 0.284
2.401TyrVal: 2.401 ± 0.104
0.343TyrTrp: 0.343 ± 0.18
0.686TyrTyr: 0.686 ± 0.359
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2917 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski