Yokapox virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Centapoxvirus

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 184 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G3EIB0|G3EIB0_9POXV Protein F15 OS=Yokapox virus OX=1076255 GN=YKV032c PE=3 SV=1
MM1 pKa = 7.59EE2 pKa = 6.03EE3 pKa = 3.47IALYY7 pKa = 10.86DD8 pKa = 3.84EE9 pKa = 5.75DD10 pKa = 6.11SILLSSEE17 pKa = 3.96LNNIISIIEE26 pKa = 4.27NGDD29 pKa = 4.23DD30 pKa = 3.67IPNNIYY36 pKa = 10.75NIITITSDD44 pKa = 3.09AYY46 pKa = 11.91NMIKK50 pKa = 10.54NLTDD54 pKa = 3.27NDD56 pKa = 3.85INNIICFLNTLNDD69 pKa = 3.23NYY71 pKa = 11.13DD72 pKa = 3.35IVKK75 pKa = 10.59SSFDD79 pKa = 3.53TLISKK84 pKa = 10.69LNDD87 pKa = 2.93ITHH90 pKa = 7.05EE91 pKa = 4.22DD92 pKa = 3.52MNITFDD98 pKa = 4.87DD99 pKa = 4.48LLNMLFIIKK108 pKa = 10.18NLTDD112 pKa = 3.46EE113 pKa = 4.56EE114 pKa = 4.74FNNLLNNFVDD124 pKa = 6.41DD125 pKa = 5.11INNDD129 pKa = 3.49DD130 pKa = 4.37NIEE133 pKa = 4.26LRR135 pKa = 11.84TEE137 pKa = 4.26LNNFLYY143 pKa = 10.16SINMAIDD150 pKa = 5.82DD151 pKa = 4.12ITNDD155 pKa = 3.01INMDD159 pKa = 4.24TISILDD165 pKa = 4.17IILDD169 pKa = 3.82SLNSYY174 pKa = 9.04IQQ176 pKa = 3.14

Molecular weight: 20.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G3EI10|G3EI10_9POXV Nonessential IMV membrane protein OS=Yokapox virus OX=1076255 GN=YKV118c PE=4 SV=1
MM1 pKa = 7.45ILSIILIGVCIVIVGGIIYY20 pKa = 10.24AVYY23 pKa = 10.13YY24 pKa = 10.37RR25 pKa = 11.84NKK27 pKa = 9.78QRR29 pKa = 11.84PNNSNNNKK37 pKa = 6.9KK38 pKa = 8.07TKK40 pKa = 10.08YY41 pKa = 9.75VNSLGKK47 pKa = 9.39EE48 pKa = 4.33HH49 pKa = 7.56IDD51 pKa = 3.54SLYY54 pKa = 11.21NLFKK58 pKa = 10.93SSPP61 pKa = 3.44

Molecular weight: 6.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

184

0

184

53878

33

1852

292.8

33.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.613 ± 0.102

2.032 ± 0.099

6.502 ± 0.115

5.104 ± 0.134

4.8 ± 0.157

3.61 ± 0.117

1.867 ± 0.068

11.528 ± 0.189

8.428 ± 0.152

8.603 ± 0.174

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.522 ± 0.077

8.504 ± 0.179

2.905 ± 0.109

1.901 ± 0.075

3.465 ± 0.108

7.814 ± 0.135

5.605 ± 0.135

5.551 ± 0.111

0.666 ± 0.046

5.978 ± 0.173
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski