Lichenicoccus roseus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Lichenicoccus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4254 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5R9J600|A0A5R9J600_9PROT Uncharacterized protein OS=Lichenicoccus roseus OX=2683649 GN=FE263_09950 PE=4 SV=1
MM1 pKa = 7.17TAFSALSAAAISTQTIATIAALTTADD27 pKa = 4.51FAPLTAQQMDD37 pKa = 4.33ALTSAQWAAIVPAALSALTTTQVYY61 pKa = 8.67TISSTALAGLTSAQLVAMSSTSVEE85 pKa = 4.08ALEE88 pKa = 5.21GPQIPGLTIAALAGLSDD105 pKa = 3.89AEE107 pKa = 3.85IAGFSEE113 pKa = 3.84QFMYY117 pKa = 8.99ITPAQLASLSIDD129 pKa = 3.11QFQAISSNSLLLLTASQFGAFTTTQIQALTNAQLIGLSGKK169 pKa = 9.31QCAYY173 pKa = 11.0LSGPQLAAVSTANLAALTAYY193 pKa = 9.36QAQSISVAALASLTSTQVAALTPAILASLAGKK225 pKa = 9.85SLAAISNAALAGATTDD241 pKa = 4.34EE242 pKa = 4.36IAGLAGMGQFATLTVAQIAALSPVQLGAITTFEE275 pKa = 4.01MTGITTAQLQALTAAQIAYY294 pKa = 7.54LTPAAFATLGSAQLHH309 pKa = 5.96ALSGAQLNAVSSTDD323 pKa = 3.07IASISSATIAGLSTAALAGLGSTQIDD349 pKa = 3.96GLDD352 pKa = 3.01IAFAGVTTAQLASLTSTTLASLDD375 pKa = 3.41GRR377 pKa = 11.84EE378 pKa = 4.15WASLTTSQIASFTTAQIASLAPAALAAIPTANYY411 pKa = 10.57AGLTYY416 pKa = 10.95ADD418 pKa = 3.43IAALTTAQVAALVPSEE434 pKa = 3.94ILSFSEE440 pKa = 3.98LQIASLTKK448 pKa = 9.64PQVASISITDD458 pKa = 3.8IAALGTDD465 pKa = 4.17PARR468 pKa = 11.84MLSTNAIAGLTATQIVAMASTSVEE492 pKa = 3.98ALTEE496 pKa = 4.09NQVPALSLATFDD508 pKa = 4.39ALTPAEE514 pKa = 3.97LAGFVNNQIAFMTVAEE530 pKa = 4.37VASMSVLQIQALGSNLLTQLTAPQLAALTTAQIAALTTTQVAGLGSTQFAAFSAPQAAALNLADD594 pKa = 5.44LAGLTTNQATSLSLAALAALTSTQVAAISSSALEE628 pKa = 4.02ALSARR633 pKa = 11.84GIAAITTAALAGVSTDD649 pKa = 3.87EE650 pKa = 4.23IAALTAYY657 pKa = 10.52ASGQFQALTAAQIAALSTAQVAAITSGEE685 pKa = 4.09VLGITSAQLQALTPRR700 pKa = 11.84EE701 pKa = 3.91IAALTSVQAGTMTSTQLL718 pKa = 3.3

Molecular weight: 70.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5R9J9H8|A0A5R9J9H8_9PROT SDR family oxidoreductase OS=Lichenicoccus roseus OX=2683649 GN=FE263_03185 PE=4 SV=1
MM1 pKa = 7.39RR2 pKa = 11.84TLLTLLMVFAMIGTVGVLAAGVVGFVRR29 pKa = 11.84GGGDD33 pKa = 3.16PRR35 pKa = 11.84RR36 pKa = 11.84SNRR39 pKa = 11.84LMRR42 pKa = 11.84WRR44 pKa = 11.84VILQASAILLFVLLLTIFRR63 pKa = 11.84RR64 pKa = 3.89

Molecular weight: 7.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4254

0

4254

1424553

26

8351

334.9

35.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.381 ± 0.051

0.925 ± 0.012

5.543 ± 0.029

4.793 ± 0.044

3.214 ± 0.025

9.18 ± 0.042

2.315 ± 0.019

4.606 ± 0.029

1.877 ± 0.028

11.037 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.31 ± 0.02

2.186 ± 0.023

5.707 ± 0.032

3.292 ± 0.028

7.898 ± 0.063

5.528 ± 0.048

5.373 ± 0.083

7.478 ± 0.03

1.378 ± 0.015

1.978 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski