Inquilinus limosus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7046 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A211Z046|A0A211Z046_9PROT Aspartate-semialdehyde dehydrogenase OS=Inquilinus limosus OX=171674 GN=asd PE=3 SV=1
MM1 pKa = 7.66PLISNIAYY9 pKa = 10.47SPDD12 pKa = 3.61PTSGQALGLDD22 pKa = 3.73VALNGATRR30 pKa = 11.84LVVNWGDD37 pKa = 3.66GSPLQLYY44 pKa = 8.18QVEE47 pKa = 4.63PGSSSIHH54 pKa = 6.51LSHH57 pKa = 7.31AYY59 pKa = 10.17ADD61 pKa = 3.9PTVGTVVLRR70 pKa = 11.84AGGPGVPDD78 pKa = 4.65DD79 pKa = 4.1RR80 pKa = 11.84ATLNLVVGADD90 pKa = 3.55EE91 pKa = 4.56SYY93 pKa = 11.39SRR95 pKa = 11.84VSGDD99 pKa = 3.58PEE101 pKa = 4.18FDD103 pKa = 3.48TILRR107 pKa = 11.84EE108 pKa = 3.99NPLISGDD115 pKa = 3.72GNLVAWADD123 pKa = 4.16TINGHH128 pKa = 5.89SVFAMVKK135 pKa = 9.68NLATGTTDD143 pKa = 3.23YY144 pKa = 11.35LGVGRR149 pKa = 11.84DD150 pKa = 3.5AYY152 pKa = 11.05QFDD155 pKa = 4.69GPPVMLANGAAVWVYY170 pKa = 10.77EE171 pKa = 4.64GYY173 pKa = 10.8LGIAGYY179 pKa = 8.58LHH181 pKa = 7.02PASLYY186 pKa = 10.55LAATGQEE193 pKa = 3.78ITLEE197 pKa = 4.16DD198 pKa = 4.28AYY200 pKa = 10.74HH201 pKa = 5.8ITVTDD206 pKa = 3.76DD207 pKa = 2.9AKK209 pKa = 10.92YY210 pKa = 10.65AVYY213 pKa = 10.19QYY215 pKa = 10.01DD216 pKa = 3.79TEE218 pKa = 4.78LGSGQNGWYY227 pKa = 10.49LRR229 pKa = 11.84DD230 pKa = 3.54LDD232 pKa = 4.97AGTSVYY238 pKa = 10.69LGADD242 pKa = 3.51SEE244 pKa = 4.82YY245 pKa = 10.9DD246 pKa = 3.21GPRR249 pKa = 11.84YY250 pKa = 9.21HH251 pKa = 6.64VHH253 pKa = 6.61FVDD256 pKa = 4.12GQLVVDD262 pKa = 5.2DD263 pKa = 5.76DD264 pKa = 4.34STGQQSVSGALATDD278 pKa = 4.12TTADD282 pKa = 3.31GSVTVIATDD291 pKa = 3.65DD292 pKa = 3.61ALAPGDD298 pKa = 4.11TNNGSDD304 pKa = 4.62VYY306 pKa = 10.6LQEE309 pKa = 4.63NGSPTHH315 pKa = 7.29DD316 pKa = 3.31GTAGPDD322 pKa = 3.54VLLLGAANDD331 pKa = 3.87IADD334 pKa = 3.96GGAGKK339 pKa = 10.35DD340 pKa = 3.82YY341 pKa = 10.97LAGGAGDD348 pKa = 4.58DD349 pKa = 4.32SLSGGAGDD357 pKa = 5.54DD358 pKa = 3.99LLEE361 pKa = 4.9GGAGADD367 pKa = 3.9SLNGGDD373 pKa = 4.88GIDD376 pKa = 3.41TAGYY380 pKa = 7.28ATSLAGVQASLDD392 pKa = 3.66RR393 pKa = 11.84PAGNTGAAAGDD404 pKa = 3.95SYY406 pKa = 12.06AGIEE410 pKa = 4.15NLLGSAFADD419 pKa = 3.64RR420 pKa = 11.84LEE422 pKa = 5.19GDD424 pKa = 3.34AGANALRR431 pKa = 11.84GGAGDD436 pKa = 4.41DD437 pKa = 3.42RR438 pKa = 11.84LGGLGGDD445 pKa = 3.98DD446 pKa = 3.64RR447 pKa = 11.84LVGGDD452 pKa = 3.61GGDD455 pKa = 3.65IISGGSGNDD464 pKa = 3.33RR465 pKa = 11.84IYY467 pKa = 11.29GGAGDD472 pKa = 5.03DD473 pKa = 4.25RR474 pKa = 11.84MTGGAGADD482 pKa = 3.27VFVIQPGFGRR492 pKa = 11.84DD493 pKa = 3.24VVTDD497 pKa = 4.53FSHH500 pKa = 7.39AAGDD504 pKa = 3.85VILFDD509 pKa = 4.21RR510 pKa = 11.84DD511 pKa = 3.35VFASFAEE518 pKa = 4.67VMAHH522 pKa = 6.13AADD525 pKa = 3.92YY526 pKa = 10.57GADD529 pKa = 3.61GTVIALDD536 pKa = 4.3ADD538 pKa = 4.07DD539 pKa = 5.69KK540 pKa = 11.67LILLGVDD547 pKa = 3.15RR548 pKa = 11.84ASLVAGDD555 pKa = 3.78FAFVV559 pKa = 3.08

Molecular weight: 56.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A211ZIN8|A0A211ZIN8_9PROT MFS transporter OS=Inquilinus limosus OX=171674 GN=BWR60_20960 PE=4 SV=1
MM1 pKa = 7.2PRR3 pKa = 11.84EE4 pKa = 3.92RR5 pKa = 11.84QRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84ATVCVVSVSSQAMTSASRR27 pKa = 11.84TRR29 pKa = 11.84AASPARR35 pKa = 11.84IPGIRR40 pKa = 11.84AGSRR44 pKa = 11.84RR45 pKa = 11.84SAKK48 pKa = 9.97LRR50 pKa = 11.84STAATAASRR59 pKa = 11.84RR60 pKa = 11.84RR61 pKa = 11.84ARR63 pKa = 11.84SASTLAASPAGRR75 pKa = 11.84AGSGVPGQAGDD86 pKa = 3.79QRR88 pKa = 11.84PHH90 pKa = 7.18SSASPRR96 pKa = 11.84PQARR100 pKa = 11.84PAITEE105 pKa = 3.91PNGRR109 pKa = 11.84SSTRR113 pKa = 11.84RR114 pKa = 11.84VSSSS118 pKa = 2.59

Molecular weight: 12.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7046

0

7046

2248913

26

3549

319.2

34.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.76 ± 0.043

0.773 ± 0.009

5.881 ± 0.029

5.126 ± 0.026

3.463 ± 0.018

9.411 ± 0.041

1.943 ± 0.014

4.729 ± 0.021

2.339 ± 0.023

10.662 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.141 ± 0.013

2.067 ± 0.018

5.791 ± 0.023

3.044 ± 0.016

7.755 ± 0.037

4.769 ± 0.021

5.181 ± 0.022

7.601 ± 0.021

1.456 ± 0.013

2.103 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski