Amino acid dipepetide frequency for Sclerotinia sclerotiorum botybirnavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.248AlaAla: 6.248 ± 1.914
1.087AlaCys: 1.087 ± 0.035
4.075AlaAsp: 4.075 ± 1.094
5.977AlaGlu: 5.977 ± 0.961
2.445AlaPhe: 2.445 ± 0.113
4.89AlaGly: 4.89 ± 0.543
0.272AlaHis: 0.272 ± 0.201
3.26AlaIle: 3.26 ± 0.105
4.89AlaLys: 4.89 ± 0.928
7.607AlaLeu: 7.607 ± 0.631
2.717AlaMet: 2.717 ± 0.088
4.347AlaAsn: 4.347 ± 0.629
2.988AlaPro: 2.988 ± 0.289
3.26AlaGln: 3.26 ± 0.105
4.618AlaArg: 4.618 ± 0.726
7.607AlaSer: 7.607 ± 0.246
8.422AlaThr: 8.422 ± 0.69
8.422AlaVal: 8.422 ± 0.305
1.63AlaTrp: 1.63 ± 0.822
1.902AlaTyr: 1.902 ± 0.639
0.0AlaXaa: 0.0 ± 0.0
Cys
1.63CysAla: 1.63 ± 0.717
0.0CysCys: 0.0 ± 0.0
0.815CysAsp: 0.815 ± 0.166
0.272CysGlu: 0.272 ± 0.184
0.272CysPhe: 0.272 ± 0.201
0.543CysGly: 0.543 ± 0.018
0.543CysHis: 0.543 ± 0.018
0.815CysIle: 0.815 ± 0.166
0.543CysLys: 0.543 ± 0.402
0.815CysLeu: 0.815 ± 0.166
0.0CysMet: 0.0 ± 0.0
0.272CysAsn: 0.272 ± 0.184
0.272CysPro: 0.272 ± 0.201
0.543CysGln: 0.543 ± 0.367
0.272CysArg: 0.272 ± 0.184
0.543CysSer: 0.543 ± 0.367
0.272CysThr: 0.272 ± 0.184
0.272CysVal: 0.272 ± 0.201
0.0CysTrp: 0.0 ± 0.0
0.815CysTyr: 0.815 ± 0.551
0.0CysXaa: 0.0 ± 0.0
Asp
4.347AspAla: 4.347 ± 0.91
0.272AspCys: 0.272 ± 0.184
4.347AspAsp: 4.347 ± 0.14
3.803AspGlu: 3.803 ± 0.262
2.988AspPhe: 2.988 ± 0.481
2.988AspGly: 2.988 ± 0.674
1.087AspHis: 1.087 ± 0.035
2.988AspIle: 2.988 ± 1.443
2.717AspLys: 2.717 ± 0.297
4.89AspLeu: 4.89 ± 2.151
1.087AspMet: 1.087 ± 0.35
1.087AspAsn: 1.087 ± 0.035
2.445AspPro: 2.445 ± 0.656
1.902AspGln: 1.902 ± 0.131
2.173AspArg: 2.173 ± 0.315
4.075AspSer: 4.075 ± 1.478
4.618AspThr: 4.618 ± 0.813
1.902AspVal: 1.902 ± 0.516
1.358AspTrp: 1.358 ± 0.236
2.717AspTyr: 2.717 ± 1.067
0.0AspXaa: 0.0 ± 0.0
Glu
5.162GluAla: 5.162 ± 0.744
0.543GluCys: 0.543 ± 0.018
4.075GluAsp: 4.075 ± 1.215
6.52GluGlu: 6.52 ± 1.328
2.717GluPhe: 2.717 ± 0.682
1.902GluGly: 1.902 ± 0.516
1.358GluHis: 1.358 ± 0.533
2.717GluIle: 2.717 ± 0.473
4.075GluLys: 4.075 ± 1.215
4.618GluLeu: 4.618 ± 0.342
2.445GluMet: 2.445 ± 0.113
2.445GluAsn: 2.445 ± 0.498
2.988GluPro: 2.988 ± 0.096
4.347GluGln: 4.347 ± 0.14
3.803GluArg: 3.803 ± 1.031
6.792GluSer: 6.792 ± 1.181
3.532GluThr: 3.532 ± 0.691
4.075GluVal: 4.075 ± 0.061
1.087GluTrp: 1.087 ± 0.734
3.532GluTyr: 3.532 ± 0.691
0.0GluXaa: 0.0 ± 0.0
Phe
1.63PheAla: 1.63 ± 0.053
0.0PheCys: 0.0 ± 0.0
2.988PheAsp: 2.988 ± 0.674
4.89PheGlu: 4.89 ± 0.996
0.543PhePhe: 0.543 ± 0.402
3.26PheGly: 3.26 ± 0.664
0.543PheHis: 0.543 ± 0.367
0.272PheIle: 0.272 ± 0.184
3.26PheLys: 3.26 ± 0.279
2.717PheLeu: 2.717 ± 1.067
0.272PheMet: 0.272 ± 0.184
1.63PheAsn: 1.63 ± 0.437
1.63PhePro: 1.63 ± 0.053
1.087PheGln: 1.087 ± 0.035
1.902PheArg: 1.902 ± 0.131
3.532PheSer: 3.532 ± 0.078
1.358PheThr: 1.358 ± 0.148
2.988PheVal: 2.988 ± 0.674
0.543PheTrp: 0.543 ± 0.018
1.358PheTyr: 1.358 ± 0.533
0.0PheXaa: 0.0 ± 0.0
Gly
3.532GlyAla: 3.532 ± 0.078
0.815GlyCys: 0.815 ± 0.166
4.075GlyAsp: 4.075 ± 0.324
2.445GlyGlu: 2.445 ± 0.271
2.988GlyPhe: 2.988 ± 0.481
4.075GlyGly: 4.075 ± 1.094
1.63GlyHis: 1.63 ± 0.053
3.26GlyIle: 3.26 ± 1.26
3.532GlyLys: 3.532 ± 0.078
5.433GlyLeu: 5.433 ± 0.945
2.173GlyMet: 2.173 ± 0.315
2.988GlyAsn: 2.988 ± 0.481
2.445GlyPro: 2.445 ± 0.498
2.445GlyGln: 2.445 ± 0.883
3.532GlyArg: 3.532 ± 0.307
5.433GlySer: 5.433 ± 0.176
4.347GlyThr: 4.347 ± 0.525
3.532GlyVal: 3.532 ± 1.461
1.358GlyTrp: 1.358 ± 0.148
1.087GlyTyr: 1.087 ± 0.42
0.0GlyXaa: 0.0 ± 0.0
His
0.815HisAla: 0.815 ± 0.166
0.272HisCys: 0.272 ± 0.184
0.815HisAsp: 0.815 ± 0.219
1.358HisGlu: 1.358 ± 0.148
0.815HisPhe: 0.815 ± 0.166
1.358HisGly: 1.358 ± 0.533
0.272HisHis: 0.272 ± 0.201
1.358HisIle: 1.358 ± 0.148
0.272HisLys: 0.272 ± 0.201
1.902HisLeu: 1.902 ± 0.254
0.815HisMet: 0.815 ± 0.219
0.272HisAsn: 0.272 ± 0.201
0.543HisPro: 0.543 ± 0.367
1.087HisGln: 1.087 ± 0.35
1.63HisArg: 1.63 ± 0.332
2.717HisSer: 2.717 ± 0.473
1.087HisThr: 1.087 ± 0.35
1.358HisVal: 1.358 ± 0.236
0.0HisTrp: 0.0 ± 0.0
2.173HisTyr: 2.173 ± 0.455
0.0HisXaa: 0.0 ± 0.0
Ile
5.977IleAla: 5.977 ± 0.192
0.272IleCys: 0.272 ± 0.184
1.358IleAsp: 1.358 ± 0.148
2.717IleGlu: 2.717 ± 1.627
1.358IlePhe: 1.358 ± 0.236
1.63IleGly: 1.63 ± 0.717
1.087IleHis: 1.087 ± 0.35
0.815IleIle: 0.815 ± 0.166
2.445IleLys: 2.445 ± 0.271
3.26IleLeu: 3.26 ± 0.875
1.087IleMet: 1.087 ± 0.035
2.173IleAsn: 2.173 ± 0.315
2.717IlePro: 2.717 ± 0.297
1.358IleGln: 1.358 ± 0.621
2.717IleArg: 2.717 ± 0.088
4.89IleSer: 4.89 ± 0.227
2.173IleThr: 2.173 ± 0.315
2.173IleVal: 2.173 ± 0.07
1.087IleTrp: 1.087 ± 0.35
1.087IleTyr: 1.087 ± 0.035
0.0IleXaa: 0.0 ± 0.0
Lys
4.347LysAla: 4.347 ± 0.244
0.0LysCys: 0.0 ± 0.0
2.173LysAsp: 2.173 ± 0.07
2.173LysGlu: 2.173 ± 0.315
2.173LysPhe: 2.173 ± 0.455
3.803LysGly: 3.803 ± 0.892
1.63LysHis: 1.63 ± 0.822
2.988LysIle: 2.988 ± 0.096
3.532LysLys: 3.532 ± 1.076
3.532LysLeu: 3.532 ± 0.691
1.087LysMet: 1.087 ± 0.035
2.173LysAsn: 2.173 ± 0.315
3.26LysPro: 3.26 ± 0.279
1.902LysGln: 1.902 ± 0.254
5.162LysArg: 5.162 ± 0.026
5.162LysSer: 5.162 ± 0.359
2.717LysThr: 2.717 ± 0.682
2.717LysVal: 2.717 ± 0.682
0.272LysTrp: 0.272 ± 0.184
1.902LysTyr: 1.902 ± 1.023
0.0LysXaa: 0.0 ± 0.0
Leu
9.237LeuAla: 9.237 ± 1.453
1.087LeuCys: 1.087 ± 0.035
3.532LeuAsp: 3.532 ± 0.848
7.878LeuGlu: 7.878 ± 1.092
2.717LeuPhe: 2.717 ± 0.088
6.792LeuGly: 6.792 ± 1.951
0.815LeuHis: 0.815 ± 0.219
3.532LeuIle: 3.532 ± 0.691
5.977LeuLys: 5.977 ± 0.193
5.705LeuLeu: 5.705 ± 0.393
1.902LeuMet: 1.902 ± 0.516
3.532LeuAsn: 3.532 ± 0.078
5.977LeuPro: 5.977 ± 0.578
2.445LeuGln: 2.445 ± 1.041
5.977LeuArg: 5.977 ± 0.576
5.705LeuSer: 5.705 ± 1.531
3.803LeuThr: 3.803 ± 0.647
3.26LeuVal: 3.26 ± 0.49
1.358LeuTrp: 1.358 ± 0.236
3.26LeuTyr: 3.26 ± 1.434
0.0LeuXaa: 0.0 ± 0.0
Met
1.358MetAla: 1.358 ± 0.621
0.543MetCys: 0.543 ± 0.367
1.087MetAsp: 1.087 ± 0.734
1.087MetGlu: 1.087 ± 0.35
0.543MetPhe: 0.543 ± 0.367
1.902MetGly: 1.902 ± 0.516
1.087MetHis: 1.087 ± 0.035
1.358MetIle: 1.358 ± 0.918
1.902MetLys: 1.902 ± 0.639
2.717MetLeu: 2.717 ± 0.088
0.272MetMet: 0.272 ± 0.184
1.358MetAsn: 1.358 ± 0.148
1.63MetPro: 1.63 ± 0.437
1.358MetGln: 1.358 ± 0.148
1.63MetArg: 1.63 ± 0.053
2.717MetSer: 2.717 ± 0.088
2.173MetThr: 2.173 ± 0.455
2.445MetVal: 2.445 ± 0.498
0.272MetTrp: 0.272 ± 0.184
1.087MetTyr: 1.087 ± 0.035
0.0MetXaa: 0.0 ± 0.0
Asn
4.618AsnAla: 4.618 ± 0.726
0.0AsnCys: 0.0 ± 0.0
2.445AsnAsp: 2.445 ± 0.498
0.815AsnGlu: 0.815 ± 0.551
2.173AsnPhe: 2.173 ± 0.699
2.173AsnGly: 2.173 ± 0.699
0.815AsnHis: 0.815 ± 0.219
3.803AsnIle: 3.803 ± 1.031
1.358AsnLys: 1.358 ± 0.148
2.988AsnLeu: 2.988 ± 0.674
1.087AsnMet: 1.087 ± 0.113
1.087AsnAsn: 1.087 ± 0.42
2.173AsnPro: 2.173 ± 0.315
2.717AsnGln: 2.717 ± 1.067
1.902AsnArg: 1.902 ± 0.254
2.717AsnSer: 2.717 ± 0.088
2.988AsnThr: 2.988 ± 0.096
2.445AsnVal: 2.445 ± 0.498
0.0AsnTrp: 0.0 ± 0.0
1.358AsnTyr: 1.358 ± 0.148
0.0AsnXaa: 0.0 ± 0.0
Pro
3.803ProAla: 3.803 ± 0.892
0.543ProCys: 0.543 ± 0.018
3.803ProAsp: 3.803 ± 0.508
2.988ProGlu: 2.988 ± 0.096
1.63ProPhe: 1.63 ± 0.053
1.902ProGly: 1.902 ± 0.131
0.815ProHis: 0.815 ± 0.551
1.63ProIle: 1.63 ± 0.332
2.988ProLys: 2.988 ± 0.096
3.26ProLeu: 3.26 ± 0.105
0.815ProMet: 0.815 ± 0.219
0.815ProAsn: 0.815 ± 0.166
1.358ProPro: 1.358 ± 0.148
2.717ProGln: 2.717 ± 0.297
3.26ProArg: 3.26 ± 0.105
3.803ProSer: 3.803 ± 0.892
4.347ProThr: 4.347 ± 0.525
4.075ProVal: 4.075 ± 0.83
0.0ProTrp: 0.0 ± 0.0
1.902ProTyr: 1.902 ± 0.131
0.0ProXaa: 0.0 ± 0.0
Gln
4.347GlnAla: 4.347 ± 1.295
0.272GlnCys: 0.272 ± 0.184
1.902GlnAsp: 1.902 ± 0.254
1.902GlnGlu: 1.902 ± 0.254
1.63GlnPhe: 1.63 ± 0.332
2.988GlnGly: 2.988 ± 0.096
1.087GlnHis: 1.087 ± 0.35
1.087GlnIle: 1.087 ± 0.035
2.173GlnLys: 2.173 ± 0.315
3.803GlnLeu: 3.803 ± 0.508
1.63GlnMet: 1.63 ± 0.717
1.63GlnAsn: 1.63 ± 0.332
2.173GlnPro: 2.173 ± 0.84
1.902GlnGln: 1.902 ± 0.254
3.803GlnArg: 3.803 ± 0.262
2.173GlnSer: 2.173 ± 0.07
1.902GlnThr: 1.902 ± 0.131
2.445GlnVal: 2.445 ± 0.498
1.358GlnTrp: 1.358 ± 0.533
2.173GlnTyr: 2.173 ± 0.315
0.0GlnXaa: 0.0 ± 0.0
Arg
5.705ArgAla: 5.705 ± 1.162
0.543ArgCys: 0.543 ± 0.018
3.803ArgAsp: 3.803 ± 0.123
3.26ArgGlu: 3.26 ± 0.279
3.532ArgPhe: 3.532 ± 0.078
2.988ArgGly: 2.988 ± 0.674
1.358ArgHis: 1.358 ± 0.148
2.173ArgIle: 2.173 ± 0.07
2.988ArgLys: 2.988 ± 0.289
5.162ArgLeu: 5.162 ± 0.359
2.988ArgMet: 2.988 ± 1.059
2.988ArgAsn: 2.988 ± 0.481
2.445ArgPro: 2.445 ± 0.113
2.173ArgGln: 2.173 ± 0.455
3.803ArgArg: 3.803 ± 0.508
4.89ArgSer: 4.89 ± 0.928
4.075ArgThr: 4.075 ± 0.445
4.89ArgVal: 4.89 ± 0.612
1.358ArgTrp: 1.358 ± 0.621
1.63ArgTyr: 1.63 ± 1.102
0.0ArgXaa: 0.0 ± 0.0
Ser
7.607SerAla: 7.607 ± 0.631
1.087SerCys: 1.087 ± 0.35
4.075SerAsp: 4.075 ± 0.709
7.607SerGlu: 7.607 ± 1.4
3.532SerPhe: 3.532 ± 0.078
6.792SerGly: 6.792 ± 0.797
1.902SerHis: 1.902 ± 0.131
3.532SerIle: 3.532 ± 0.307
3.803SerLys: 3.803 ± 0.508
7.335SerLeu: 7.335 ± 1.969
1.63SerMet: 1.63 ± 0.437
3.532SerAsn: 3.532 ± 0.078
2.988SerPro: 2.988 ± 0.674
3.803SerGln: 3.803 ± 0.123
5.977SerArg: 5.977 ± 0.193
8.965SerSer: 8.965 ± 0.867
3.803SerThr: 3.803 ± 0.262
5.705SerVal: 5.705 ± 0.762
0.543SerTrp: 0.543 ± 0.402
2.173SerTyr: 2.173 ± 0.07
0.0SerXaa: 0.0 ± 0.0
Thr
5.705ThrAla: 5.705 ± 0.377
0.815ThrCys: 0.815 ± 0.166
2.445ThrAsp: 2.445 ± 0.883
3.532ThrGlu: 3.532 ± 0.691
1.087ThrPhe: 1.087 ± 0.35
4.075ThrGly: 4.075 ± 1.478
1.902ThrHis: 1.902 ± 0.131
3.26ThrIle: 3.26 ± 1.049
2.173ThrLys: 2.173 ± 0.07
7.607ThrLeu: 7.607 ± 1.293
1.63ThrMet: 1.63 ± 0.817
2.988ThrAsn: 2.988 ± 0.865
3.26ThrPro: 3.26 ± 0.664
3.803ThrGln: 3.803 ± 0.123
4.075ThrArg: 4.075 ± 0.061
3.803ThrSer: 3.803 ± 0.892
3.26ThrThr: 3.26 ± 0.664
3.26ThrVal: 3.26 ± 1.26
1.63ThrTrp: 1.63 ± 1.102
1.63ThrTyr: 1.63 ± 0.437
0.0ThrXaa: 0.0 ± 0.0
Val
6.52ValAla: 6.52 ± 1.328
1.358ValCys: 1.358 ± 0.533
3.532ValAsp: 3.532 ± 0.463
4.89ValGlu: 4.89 ± 0.996
1.63ValPhe: 1.63 ± 0.437
3.803ValGly: 3.803 ± 0.123
1.902ValHis: 1.902 ± 1.023
1.63ValIle: 1.63 ± 0.053
2.445ValLys: 2.445 ± 0.271
4.89ValLeu: 4.89 ± 0.158
2.445ValMet: 2.445 ± 0.498
1.902ValAsn: 1.902 ± 0.639
2.717ValPro: 2.717 ± 0.088
2.717ValGln: 2.717 ± 0.297
2.988ValArg: 2.988 ± 1.059
5.433ValSer: 5.433 ± 0.176
4.89ValThr: 4.89 ± 0.543
4.618ValVal: 4.618 ± 1.197
0.272ValTrp: 0.272 ± 0.201
2.717ValTyr: 2.717 ± 0.297
0.0ValXaa: 0.0 ± 0.0
Trp
1.358TrpAla: 1.358 ± 0.148
0.0TrpCys: 0.0 ± 0.0
0.543TrpAsp: 0.543 ± 0.367
1.087TrpGlu: 1.087 ± 0.35
0.815TrpPhe: 0.815 ± 0.219
1.087TrpGly: 1.087 ± 0.035
0.272TrpHis: 0.272 ± 0.184
0.543TrpIle: 0.543 ± 0.402
0.543TrpLys: 0.543 ± 0.402
1.63TrpLeu: 1.63 ± 0.437
1.087TrpMet: 1.087 ± 0.35
0.543TrpAsn: 0.543 ± 0.367
0.272TrpPro: 0.272 ± 0.201
0.272TrpGln: 0.272 ± 0.184
0.815TrpArg: 0.815 ± 0.166
1.63TrpSer: 1.63 ± 0.332
0.543TrpThr: 0.543 ± 0.018
0.815TrpVal: 0.815 ± 0.604
0.272TrpTrp: 0.272 ± 0.201
1.087TrpTyr: 1.087 ± 0.734
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.717TyrAla: 2.717 ± 0.088
0.0TyrCys: 0.0 ± 0.0
1.902TyrAsp: 1.902 ± 0.254
3.532TyrGlu: 3.532 ± 0.078
0.815TyrPhe: 0.815 ± 0.551
2.173TyrGly: 2.173 ± 0.699
0.543TyrHis: 0.543 ± 0.367
1.358TyrIle: 1.358 ± 0.148
1.087TyrLys: 1.087 ± 0.035
4.618TyrLeu: 4.618 ± 0.043
1.087TyrMet: 1.087 ± 0.035
1.902TyrAsn: 1.902 ± 0.131
2.173TyrPro: 2.173 ± 0.699
0.543TyrGln: 0.543 ± 0.018
2.717TyrArg: 2.717 ± 0.473
3.803TyrSer: 3.803 ± 0.508
1.902TyrThr: 1.902 ± 0.131
1.902TyrVal: 1.902 ± 0.9
0.815TyrTrp: 0.815 ± 0.166
1.087TyrTyr: 1.087 ± 0.035
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (3682 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski